Gene : OBE1 A. thaliana TAIR10
Primary Identifier:  ? AT3G07780 Defline:  (1 of 2) PTHR21736:SF20 - PROTEIN OBERON 1-RELATED
Genomic Order:  770 Name:  ? AT3G07780
Secondary Identifier:  ? PAC:19663462
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G07780 0.5kb upstream 0.5kb upstream 3056 true Chr3: 2483969-2487024 Arabidopsis thaliana
AT3G07780 0.5kb upstream 0.5kb upstream 500 false Chr3: 2483969-2484468 Arabidopsis thaliana
AT3G07780 0.5kb downstream 0.5kb downstream 3056 true Chr3: 2484469-2487524 Arabidopsis thaliana
AT3G07780 0.5kb downstream 0.5kb downstream 500 false Chr3: 2487025-2487524 Arabidopsis thaliana
AT3G07780 1.0kb upstream 1.0kb upstream 3556 true Chr3: 2483469-2487024 Arabidopsis thaliana
AT3G07780 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2483469-2484468 Arabidopsis thaliana
AT3G07780 1.0kb downstream 1.0kb downstream 3556 true Chr3: 2484469-2488024 Arabidopsis thaliana
AT3G07780 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2487025-2488024 Arabidopsis thaliana
AT3G07780 2.0kb upstream 2.0kb upstream 4556 true Chr3: 2482469-2487024 Arabidopsis thaliana
AT3G07780 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2482469-2484468 Arabidopsis thaliana
AT3G07780 2.0kb downstream 2.0kb downstream 4556 true Chr3: 2484469-2489024 Arabidopsis thaliana
AT3G07780 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2487025-2489024 Arabidopsis thaliana
AT3G07780 5.0kb upstream 5.0kb upstream 7556 true Chr3: 2479469-2487024 Arabidopsis thaliana
AT3G07780 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2479469-2484468 Arabidopsis thaliana
AT3G07780 5.0kb downstream 5.0kb downstream 7556 true Chr3: 2484469-2492024 Arabidopsis thaliana
AT3G07780 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2487025-2492024 Arabidopsis thaliana
AT3G07780 10.0kb upstream 10.0kb upstream 12556 true Chr3: 2474469-2487024 Arabidopsis thaliana
AT3G07780 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2474469-2484468 Arabidopsis thaliana
AT3G07780 10.0kb downstream 10.0kb downstream 12556 true Chr3: 2484469-2497024 Arabidopsis thaliana
AT3G07780 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2487025-2497024 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366980 5261 Brassicaceae View MSA
123837666 5264 Brassicales-Malvales View MSA
124337418 5266 SBM View MSA
124242275 5268 Malvidae View MSA
124068106 5270 Rosid View MSA
123747254 5271 Pentapetalae View MSA
122789487 5272 Eudicot View MSA
122041658 5273 Angiosperm View MSA
121346503 5274 Embryophyte View MSA
123380393 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 57.89     High High
cufflinks 54.448     High  
cufflinks 41.88     High Low
cufflinks 49.861     High  
cufflinks 51.26     High  
cufflinks 50.552     High  

0 Strain