Gene : AT3G07840 A. thaliana TAIR10
Defline:  (1 of 4) PTHR31375:SF37 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Genomic Order:  776
Name:  ? AT3G07840 Secondary Identifier:  ? PAC:19660418
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G07840 0.5kb upstream 0.5kb upstream 2173 true Chr3: 2501893-2504065 Arabidopsis thaliana
AT3G07840 0.5kb upstream 0.5kb upstream 500 false Chr3: 2503566-2504065 Arabidopsis thaliana
AT3G07840 0.5kb downstream 0.5kb downstream 2173 true Chr3: 2501393-2503565 Arabidopsis thaliana
AT3G07840 0.5kb downstream 0.5kb downstream 500 false Chr3: 2501393-2501892 Arabidopsis thaliana
AT3G07840 1.0kb upstream 1.0kb upstream 2673 true Chr3: 2501893-2504565 Arabidopsis thaliana
AT3G07840 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2503566-2504565 Arabidopsis thaliana
AT3G07840 1.0kb downstream 1.0kb downstream 2673 true Chr3: 2500893-2503565 Arabidopsis thaliana
AT3G07840 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2500893-2501892 Arabidopsis thaliana
AT3G07840 2.0kb upstream 2.0kb upstream 3673 true Chr3: 2501893-2505565 Arabidopsis thaliana
AT3G07840 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2503566-2505565 Arabidopsis thaliana
AT3G07840 2.0kb downstream 2.0kb downstream 3673 true Chr3: 2499893-2503565 Arabidopsis thaliana
AT3G07840 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2499893-2501892 Arabidopsis thaliana
AT3G07840 5.0kb upstream 5.0kb upstream 6673 true Chr3: 2501893-2508565 Arabidopsis thaliana
AT3G07840 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2503566-2508565 Arabidopsis thaliana
AT3G07840 5.0kb downstream 5.0kb downstream 6673 true Chr3: 2496893-2503565 Arabidopsis thaliana
AT3G07840 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2496893-2501892 Arabidopsis thaliana
AT3G07840 10.0kb upstream 10.0kb upstream 11673 true Chr3: 2501893-2513565 Arabidopsis thaliana
AT3G07840 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2503566-2513565 Arabidopsis thaliana
AT3G07840 10.0kb downstream 10.0kb downstream 11673 true Chr3: 2491893-2503565 Arabidopsis thaliana
AT3G07840 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2491893-2501892 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379002 5261 Brassicaceae View MSA
123802061 5264 Brassicales-Malvales View MSA
124299284 5266 SBM View MSA
124252748 5268 Malvidae View MSA
124074380 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain