Gene : AT3G07820 A. thaliana TAIR10
Defline:  (1 of 4) PTHR31375:SF37 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Genomic Order:  774
Name:  ? AT3G07820 Secondary Identifier:  ? PAC:19663650
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G07820 0.5kb upstream 0.5kb upstream 2156 true Chr3: 2496440-2498595 Arabidopsis thaliana
AT3G07820 0.5kb upstream 0.5kb upstream 500 false Chr3: 2498096-2498595 Arabidopsis thaliana
AT3G07820 0.5kb downstream 0.5kb downstream 2156 true Chr3: 2495940-2498095 Arabidopsis thaliana
AT3G07820 0.5kb downstream 0.5kb downstream 500 false Chr3: 2495940-2496439 Arabidopsis thaliana
AT3G07820 1.0kb upstream 1.0kb upstream 2656 true Chr3: 2496440-2499095 Arabidopsis thaliana
AT3G07820 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2498096-2499095 Arabidopsis thaliana
AT3G07820 1.0kb downstream 1.0kb downstream 2656 true Chr3: 2495440-2498095 Arabidopsis thaliana
AT3G07820 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2495440-2496439 Arabidopsis thaliana
AT3G07820 2.0kb upstream 2.0kb upstream 3656 true Chr3: 2496440-2500095 Arabidopsis thaliana
AT3G07820 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2498096-2500095 Arabidopsis thaliana
AT3G07820 2.0kb downstream 2.0kb downstream 3656 true Chr3: 2494440-2498095 Arabidopsis thaliana
AT3G07820 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2494440-2496439 Arabidopsis thaliana
AT3G07820 5.0kb upstream 5.0kb upstream 6656 true Chr3: 2496440-2503095 Arabidopsis thaliana
AT3G07820 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2498096-2503095 Arabidopsis thaliana
AT3G07820 5.0kb downstream 5.0kb downstream 6656 true Chr3: 2491440-2498095 Arabidopsis thaliana
AT3G07820 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2491440-2496439 Arabidopsis thaliana
AT3G07820 10.0kb upstream 10.0kb upstream 11656 true Chr3: 2496440-2508095 Arabidopsis thaliana
AT3G07820 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2498096-2508095 Arabidopsis thaliana
AT3G07820 10.0kb downstream 10.0kb downstream 11656 true Chr3: 2486440-2498095 Arabidopsis thaliana
AT3G07820 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2486440-2496439 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373108 5261 Brassicaceae View MSA
123841196 5264 Brassicales-Malvales View MSA
124349703 5266 SBM View MSA
124252748 5268 Malvidae View MSA
124074380 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain