Gene : AT3G06455 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12786//PTHR12786:SF1 - SPLICING FACTOR SF3A-RELATED // PROTEIN SDE2 HOMOLOG Genomic Order:  623
Name:  ? AT3G06455 Secondary Identifier:  ? PAC:19659525
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G06455 0.5kb upstream 0.5kb upstream 2121 true Chr3: 1980042-1982162 Arabidopsis thaliana
AT3G06455 0.5kb upstream 0.5kb upstream 500 false Chr3: 1980042-1980541 Arabidopsis thaliana
AT3G06455 0.5kb downstream 0.5kb downstream 2121 true Chr3: 1980542-1982662 Arabidopsis thaliana
AT3G06455 0.5kb downstream 0.5kb downstream 500 false Chr3: 1982163-1982662 Arabidopsis thaliana
AT3G06455 1.0kb upstream 1.0kb upstream 2621 true Chr3: 1979542-1982162 Arabidopsis thaliana
AT3G06455 1.0kb upstream 1.0kb upstream 1000 false Chr3: 1979542-1980541 Arabidopsis thaliana
AT3G06455 1.0kb downstream 1.0kb downstream 2621 true Chr3: 1980542-1983162 Arabidopsis thaliana
AT3G06455 1.0kb downstream 1.0kb downstream 1000 false Chr3: 1982163-1983162 Arabidopsis thaliana
AT3G06455 2.0kb upstream 2.0kb upstream 3621 true Chr3: 1978542-1982162 Arabidopsis thaliana
AT3G06455 2.0kb upstream 2.0kb upstream 2000 false Chr3: 1978542-1980541 Arabidopsis thaliana
AT3G06455 2.0kb downstream 2.0kb downstream 3621 true Chr3: 1980542-1984162 Arabidopsis thaliana
AT3G06455 2.0kb downstream 2.0kb downstream 2000 false Chr3: 1982163-1984162 Arabidopsis thaliana
AT3G06455 5.0kb upstream 5.0kb upstream 6621 true Chr3: 1975542-1982162 Arabidopsis thaliana
AT3G06455 5.0kb upstream 5.0kb upstream 5000 false Chr3: 1975542-1980541 Arabidopsis thaliana
AT3G06455 5.0kb downstream 5.0kb downstream 6621 true Chr3: 1980542-1987162 Arabidopsis thaliana
AT3G06455 5.0kb downstream 5.0kb downstream 5000 false Chr3: 1982163-1987162 Arabidopsis thaliana
AT3G06455 10.0kb upstream 10.0kb upstream 11621 true Chr3: 1970542-1982162 Arabidopsis thaliana
AT3G06455 10.0kb upstream 10.0kb upstream 10000 false Chr3: 1970542-1980541 Arabidopsis thaliana
AT3G06455 10.0kb downstream 10.0kb downstream 11621 true Chr3: 1980542-1992162 Arabidopsis thaliana
AT3G06455 10.0kb downstream 10.0kb downstream 10000 false Chr3: 1982163-1992162 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121494181 5273 Angiosperm Singleton cluster - no MSA
122329768 5261 Brassicaceae Singleton cluster - no MSA
123771053 5264 Brassicales-Malvales Singleton cluster - no MSA
124269587 5266 SBM Singleton cluster - no MSA
124125718 5268 Malvidae Singleton cluster - no MSA
123854675 5270 Rosid Singleton cluster - no MSA
123440685 5271 Pentapetalae Singleton cluster - no MSA
122476270 5272 Eudicot Singleton cluster - no MSA
121349844 5274 Embryophyte View MSA
123427367 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.042        
cufflinks 4.215        
cufflinks 2.915        
cufflinks 4.971       High
cufflinks 3.291        
cufflinks 3.326        

0 Strain