Gene : AT3G06300 A. thaliana TAIR10
Defline:  (1 of 2) PTHR10869//PTHR10869:SF64 - PROLYL 4-HYDROXYLASE ALPHA SUBUNIT // OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEIN-RELATED Genomic Order:  606
Name:  ? AT3G06300 Secondary Identifier:  ? PAC:19663386
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G06300 0.5kb upstream 0.5kb upstream 2723 true Chr3: 1907082-1909804 Arabidopsis thaliana
AT3G06300 0.5kb upstream 0.5kb upstream 500 false Chr3: 1907082-1907581 Arabidopsis thaliana
AT3G06300 0.5kb downstream 0.5kb downstream 2723 true Chr3: 1907582-1910304 Arabidopsis thaliana
AT3G06300 0.5kb downstream 0.5kb downstream 500 false Chr3: 1909805-1910304 Arabidopsis thaliana
AT3G06300 1.0kb upstream 1.0kb upstream 3223 true Chr3: 1906582-1909804 Arabidopsis thaliana
AT3G06300 1.0kb upstream 1.0kb upstream 1000 false Chr3: 1906582-1907581 Arabidopsis thaliana
AT3G06300 1.0kb downstream 1.0kb downstream 3223 true Chr3: 1907582-1910804 Arabidopsis thaliana
AT3G06300 1.0kb downstream 1.0kb downstream 1000 false Chr3: 1909805-1910804 Arabidopsis thaliana
AT3G06300 2.0kb upstream 2.0kb upstream 4223 true Chr3: 1905582-1909804 Arabidopsis thaliana
AT3G06300 2.0kb upstream 2.0kb upstream 2000 false Chr3: 1905582-1907581 Arabidopsis thaliana
AT3G06300 2.0kb downstream 2.0kb downstream 4223 true Chr3: 1907582-1911804 Arabidopsis thaliana
AT3G06300 2.0kb downstream 2.0kb downstream 2000 false Chr3: 1909805-1911804 Arabidopsis thaliana
AT3G06300 5.0kb upstream 5.0kb upstream 7223 true Chr3: 1902582-1909804 Arabidopsis thaliana
AT3G06300 5.0kb upstream 5.0kb upstream 5000 false Chr3: 1902582-1907581 Arabidopsis thaliana
AT3G06300 5.0kb downstream 5.0kb downstream 7223 true Chr3: 1907582-1914804 Arabidopsis thaliana
AT3G06300 5.0kb downstream 5.0kb downstream 5000 false Chr3: 1909805-1914804 Arabidopsis thaliana
AT3G06300 10.0kb upstream 10.0kb upstream 12223 true Chr3: 1897582-1909804 Arabidopsis thaliana
AT3G06300 10.0kb upstream 10.0kb upstream 10000 false Chr3: 1897582-1907581 Arabidopsis thaliana
AT3G06300 10.0kb downstream 10.0kb downstream 12223 true Chr3: 1907582-1919804 Arabidopsis thaliana
AT3G06300 10.0kb downstream 10.0kb downstream 10000 false Chr3: 1909805-1919804 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373011 5261 Brassicaceae View MSA
123835107 5264 Brassicales-Malvales View MSA
124350442 5266 SBM View MSA
124239367 5268 Malvidae View MSA
124061435 5270 Rosid View MSA
123741121 5271 Pentapetalae View MSA
122788089 5272 Eudicot View MSA
122045876 5273 Angiosperm View MSA
121349816 5274 Embryophyte View MSA
123428732 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.812        
cufflinks 15.113        
cufflinks 7.229       Low
cufflinks 18.8       High
cufflinks 8.833        
cufflinks 17.395        

0 Strain