Gene : AT3G05280 A. thaliana TAIR10
Defline:  (1 of 3) KOG3114 - Uncharacterized conserved protein Genomic Order:  484
Name:  ? AT3G05280 Secondary Identifier:  ? PAC:19663156
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G05280 0.5kb upstream 0.5kb upstream 2397 true Chr3: 1503758-1506154 Arabidopsis thaliana
AT3G05280 0.5kb upstream 0.5kb upstream 500 false Chr3: 1505655-1506154 Arabidopsis thaliana
AT3G05280 0.5kb downstream 0.5kb downstream 2397 true Chr3: 1503258-1505654 Arabidopsis thaliana
AT3G05280 0.5kb downstream 0.5kb downstream 500 false Chr3: 1503258-1503757 Arabidopsis thaliana
AT3G05280 1.0kb upstream 1.0kb upstream 2897 true Chr3: 1503758-1506654 Arabidopsis thaliana
AT3G05280 1.0kb upstream 1.0kb upstream 1000 false Chr3: 1505655-1506654 Arabidopsis thaliana
AT3G05280 1.0kb downstream 1.0kb downstream 2897 true Chr3: 1502758-1505654 Arabidopsis thaliana
AT3G05280 1.0kb downstream 1.0kb downstream 1000 false Chr3: 1502758-1503757 Arabidopsis thaliana
AT3G05280 2.0kb upstream 2.0kb upstream 3897 true Chr3: 1503758-1507654 Arabidopsis thaliana
AT3G05280 2.0kb upstream 2.0kb upstream 2000 false Chr3: 1505655-1507654 Arabidopsis thaliana
AT3G05280 2.0kb downstream 2.0kb downstream 3897 true Chr3: 1501758-1505654 Arabidopsis thaliana
AT3G05280 2.0kb downstream 2.0kb downstream 2000 false Chr3: 1501758-1503757 Arabidopsis thaliana
AT3G05280 5.0kb upstream 5.0kb upstream 6897 true Chr3: 1503758-1510654 Arabidopsis thaliana
AT3G05280 5.0kb upstream 5.0kb upstream 5000 false Chr3: 1505655-1510654 Arabidopsis thaliana
AT3G05280 5.0kb downstream 5.0kb downstream 6897 true Chr3: 1498758-1505654 Arabidopsis thaliana
AT3G05280 5.0kb downstream 5.0kb downstream 5000 false Chr3: 1498758-1503757 Arabidopsis thaliana
AT3G05280 10.0kb upstream 10.0kb upstream 11897 true Chr3: 1503758-1515654 Arabidopsis thaliana
AT3G05280 10.0kb upstream 10.0kb upstream 10000 false Chr3: 1505655-1515654 Arabidopsis thaliana
AT3G05280 10.0kb downstream 10.0kb downstream 11897 true Chr3: 1493758-1505654 Arabidopsis thaliana
AT3G05280 10.0kb downstream 10.0kb downstream 10000 false Chr3: 1493758-1503757 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360340 5261 Brassicaceae View MSA
123840619 5264 Brassicales-Malvales View MSA
124341227 5266 SBM View MSA
124240730 5268 Malvidae View MSA
124062675 5270 Rosid View MSA
123739303 5271 Pentapetalae View MSA
122790193 5272 Eudicot View MSA
122045240 5273 Angiosperm View MSA
121344088 5274 Embryophyte View MSA
123427303 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.188        
cufflinks 20.211        
cufflinks 12.142       Low
cufflinks 22.029        
cufflinks 13.458        
cufflinks 25.827       High

0 Strain