Gene : DRT102 A. thaliana TAIR10
Primary Identifier:  ? AT3G04880 Defline:  (1 of 1) PTHR30345 - RIBOSE-5-PHOSPHATE ISOMERASE B
Genomic Order:  437 Name:  ? AT3G04880
Secondary Identifier:  ? PAC:19660479
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana CALVIN-PWY Arabidopsis thaliana pathologic  
Athaliana NONOXIPENT-PWY Arabidopsis thaliana pathologic  
Athaliana PENTOSE-P-PWY Arabidopsis thaliana pathologic  
Athaliana PHOTOALL-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5723 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G04880 0.5kb upstream 0.5kb upstream 1605 true Chr3: 1346273-1347877 Arabidopsis thaliana
AT3G04880 0.5kb upstream 0.5kb upstream 500 false Chr3: 1347378-1347877 Arabidopsis thaliana
AT3G04880 0.5kb downstream 0.5kb downstream 1605 true Chr3: 1345773-1347377 Arabidopsis thaliana
AT3G04880 0.5kb downstream 0.5kb downstream 500 false Chr3: 1345773-1346272 Arabidopsis thaliana
AT3G04880 1.0kb upstream 1.0kb upstream 2105 true Chr3: 1346273-1348377 Arabidopsis thaliana
AT3G04880 1.0kb upstream 1.0kb upstream 1000 false Chr3: 1347378-1348377 Arabidopsis thaliana
AT3G04880 1.0kb downstream 1.0kb downstream 2105 true Chr3: 1345273-1347377 Arabidopsis thaliana
AT3G04880 1.0kb downstream 1.0kb downstream 1000 false Chr3: 1345273-1346272 Arabidopsis thaliana
AT3G04880 2.0kb upstream 2.0kb upstream 3105 true Chr3: 1346273-1349377 Arabidopsis thaliana
AT3G04880 2.0kb upstream 2.0kb upstream 2000 false Chr3: 1347378-1349377 Arabidopsis thaliana
AT3G04880 2.0kb downstream 2.0kb downstream 3105 true Chr3: 1344273-1347377 Arabidopsis thaliana
AT3G04880 2.0kb downstream 2.0kb downstream 2000 false Chr3: 1344273-1346272 Arabidopsis thaliana
AT3G04880 5.0kb upstream 5.0kb upstream 6105 true Chr3: 1346273-1352377 Arabidopsis thaliana
AT3G04880 5.0kb upstream 5.0kb upstream 5000 false Chr3: 1347378-1352377 Arabidopsis thaliana
AT3G04880 5.0kb downstream 5.0kb downstream 6105 true Chr3: 1341273-1347377 Arabidopsis thaliana
AT3G04880 5.0kb downstream 5.0kb downstream 5000 false Chr3: 1341273-1346272 Arabidopsis thaliana
AT3G04880 10.0kb upstream 10.0kb upstream 11105 true Chr3: 1346273-1357377 Arabidopsis thaliana
AT3G04880 10.0kb upstream 10.0kb upstream 10000 false Chr3: 1347378-1357377 Arabidopsis thaliana
AT3G04880 10.0kb downstream 10.0kb downstream 11105 true Chr3: 1336273-1347377 Arabidopsis thaliana
AT3G04880 10.0kb downstream 10.0kb downstream 10000 false Chr3: 1336273-1346272 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378066 5261 Brassicaceae View MSA
123831184 5264 Brassicales-Malvales View MSA
124349311 5266 SBM View MSA
124244749 5268 Malvidae View MSA
124062390 5270 Rosid View MSA
123736544 5271 Pentapetalae View MSA
122789174 5272 Eudicot View MSA
122042906 5273 Angiosperm View MSA
121349668 5274 Embryophyte View MSA
123381392 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.548       Low
cufflinks 29.004        
cufflinks 25.395        
cufflinks 30.735     High High
cufflinks 28.623     High  
cufflinks 26.388        

0 Strain