Gene : LSH2 A. thaliana TAIR10
Primary Identifier:  ? AT3G04510 Defline:  (1 of 4) PTHR31165//PTHR31165:SF13 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED
Genomic Order:  394 Name:  ? AT3G04510
Secondary Identifier:  ? PAC:19664126
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G04510 0.5kb upstream 0.5kb upstream 1823 true Chr3: 1215636-1217458 Arabidopsis thaliana
AT3G04510 0.5kb upstream 0.5kb upstream 500 false Chr3: 1216959-1217458 Arabidopsis thaliana
AT3G04510 0.5kb downstream 0.5kb downstream 1823 true Chr3: 1215136-1216958 Arabidopsis thaliana
AT3G04510 0.5kb downstream 0.5kb downstream 500 false Chr3: 1215136-1215635 Arabidopsis thaliana
AT3G04510 1.0kb upstream 1.0kb upstream 2323 true Chr3: 1215636-1217958 Arabidopsis thaliana
AT3G04510 1.0kb upstream 1.0kb upstream 1000 false Chr3: 1216959-1217958 Arabidopsis thaliana
AT3G04510 1.0kb downstream 1.0kb downstream 2323 true Chr3: 1214636-1216958 Arabidopsis thaliana
AT3G04510 1.0kb downstream 1.0kb downstream 1000 false Chr3: 1214636-1215635 Arabidopsis thaliana
AT3G04510 2.0kb upstream 2.0kb upstream 3323 true Chr3: 1215636-1218958 Arabidopsis thaliana
AT3G04510 2.0kb upstream 2.0kb upstream 2000 false Chr3: 1216959-1218958 Arabidopsis thaliana
AT3G04510 2.0kb downstream 2.0kb downstream 3323 true Chr3: 1213636-1216958 Arabidopsis thaliana
AT3G04510 2.0kb downstream 2.0kb downstream 2000 false Chr3: 1213636-1215635 Arabidopsis thaliana
AT3G04510 5.0kb upstream 5.0kb upstream 6323 true Chr3: 1215636-1221958 Arabidopsis thaliana
AT3G04510 5.0kb upstream 5.0kb upstream 5000 false Chr3: 1216959-1221958 Arabidopsis thaliana
AT3G04510 5.0kb downstream 5.0kb downstream 6323 true Chr3: 1210636-1216958 Arabidopsis thaliana
AT3G04510 5.0kb downstream 5.0kb downstream 5000 false Chr3: 1210636-1215635 Arabidopsis thaliana
AT3G04510 10.0kb upstream 10.0kb upstream 11323 true Chr3: 1215636-1226958 Arabidopsis thaliana
AT3G04510 10.0kb upstream 10.0kb upstream 10000 false Chr3: 1216959-1226958 Arabidopsis thaliana
AT3G04510 10.0kb downstream 10.0kb downstream 11323 true Chr3: 1205636-1216958 Arabidopsis thaliana
AT3G04510 10.0kb downstream 10.0kb downstream 10000 false Chr3: 1205636-1215635 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368624 5261 Brassicaceae View MSA
123839186 5264 Brassicales-Malvales View MSA
124337661 5266 SBM View MSA
124244960 5268 Malvidae View MSA
124063298 5270 Rosid View MSA
123753170 5271 Pentapetalae View MSA
122789282 5272 Eudicot View MSA
122049887 5273 Angiosperm View MSA
121351474 5274 Embryophyte View MSA
123382179 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.001        
cufflinks 20.929        
cufflinks 0.493       Low
cufflinks 17.914        
cufflinks 0.443       Low
cufflinks 27.156       High

0 Strain