Gene : AT3G04440 A. thaliana TAIR10
Defline:  (1 of 3) PTHR12385:SF51 - F20H23.27 PROTEIN-RELATED Genomic Order:  387
Name:  ? AT3G04440 Secondary Identifier:  ? PAC:19663817
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G04440 0.5kb upstream 0.5kb upstream 2483 true Chr3: 1178218-1180700 Arabidopsis thaliana
AT3G04440 0.5kb upstream 0.5kb upstream 500 false Chr3: 1178218-1178717 Arabidopsis thaliana
AT3G04440 0.5kb downstream 0.5kb downstream 2483 true Chr3: 1178718-1181200 Arabidopsis thaliana
AT3G04440 0.5kb downstream 0.5kb downstream 500 false Chr3: 1180701-1181200 Arabidopsis thaliana
AT3G04440 1.0kb upstream 1.0kb upstream 2983 true Chr3: 1177718-1180700 Arabidopsis thaliana
AT3G04440 1.0kb upstream 1.0kb upstream 1000 false Chr3: 1177718-1178717 Arabidopsis thaliana
AT3G04440 1.0kb downstream 1.0kb downstream 2983 true Chr3: 1178718-1181700 Arabidopsis thaliana
AT3G04440 1.0kb downstream 1.0kb downstream 1000 false Chr3: 1180701-1181700 Arabidopsis thaliana
AT3G04440 2.0kb upstream 2.0kb upstream 3983 true Chr3: 1176718-1180700 Arabidopsis thaliana
AT3G04440 2.0kb upstream 2.0kb upstream 2000 false Chr3: 1176718-1178717 Arabidopsis thaliana
AT3G04440 2.0kb downstream 2.0kb downstream 3983 true Chr3: 1178718-1182700 Arabidopsis thaliana
AT3G04440 2.0kb downstream 2.0kb downstream 2000 false Chr3: 1180701-1182700 Arabidopsis thaliana
AT3G04440 5.0kb upstream 5.0kb upstream 6983 true Chr3: 1173718-1180700 Arabidopsis thaliana
AT3G04440 5.0kb upstream 5.0kb upstream 5000 false Chr3: 1173718-1178717 Arabidopsis thaliana
AT3G04440 5.0kb downstream 5.0kb downstream 6983 true Chr3: 1178718-1185700 Arabidopsis thaliana
AT3G04440 5.0kb downstream 5.0kb downstream 5000 false Chr3: 1180701-1185700 Arabidopsis thaliana
AT3G04440 10.0kb upstream 10.0kb upstream 11983 true Chr3: 1168718-1180700 Arabidopsis thaliana
AT3G04440 10.0kb upstream 10.0kb upstream 10000 false Chr3: 1168718-1178717 Arabidopsis thaliana
AT3G04440 10.0kb downstream 10.0kb downstream 11983 true Chr3: 1178718-1190700 Arabidopsis thaliana
AT3G04440 10.0kb downstream 10.0kb downstream 10000 false Chr3: 1180701-1190700 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360423 5261 Brassicaceae View MSA
123829317 5264 Brassicales-Malvales View MSA
124338542 5266 SBM View MSA
124240899 5268 Malvidae View MSA
124060474 5270 Rosid View MSA
123745461 5271 Pentapetalae View MSA
122789891 5272 Eudicot View MSA
122050147 5273 Angiosperm View MSA
121349087 5274 Embryophyte View MSA
123381160 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.015     Low Low
cufflinks 0.023     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.048     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.024     Low  

0 Strain