Gene : AT3G04560 A. thaliana TAIR10
Defline:  (1 of 1) PTHR36749:SF1 - F7O18.3 PROTEIN Genomic Order:  400
Name:  ? AT3G04560 Secondary Identifier:  ? PAC:19660660
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G04560 0.5kb upstream 0.5kb upstream 2549 true Chr3: 1227360-1229908 Arabidopsis thaliana
AT3G04560 0.5kb upstream 0.5kb upstream 500 false Chr3: 1229409-1229908 Arabidopsis thaliana
AT3G04560 0.5kb downstream 0.5kb downstream 2549 true Chr3: 1226860-1229408 Arabidopsis thaliana
AT3G04560 0.5kb downstream 0.5kb downstream 500 false Chr3: 1226860-1227359 Arabidopsis thaliana
AT3G04560 1.0kb upstream 1.0kb upstream 3049 true Chr3: 1227360-1230408 Arabidopsis thaliana
AT3G04560 1.0kb upstream 1.0kb upstream 1000 false Chr3: 1229409-1230408 Arabidopsis thaliana
AT3G04560 1.0kb downstream 1.0kb downstream 3049 true Chr3: 1226360-1229408 Arabidopsis thaliana
AT3G04560 1.0kb downstream 1.0kb downstream 1000 false Chr3: 1226360-1227359 Arabidopsis thaliana
AT3G04560 2.0kb upstream 2.0kb upstream 4049 true Chr3: 1227360-1231408 Arabidopsis thaliana
AT3G04560 2.0kb upstream 2.0kb upstream 2000 false Chr3: 1229409-1231408 Arabidopsis thaliana
AT3G04560 2.0kb downstream 2.0kb downstream 4049 true Chr3: 1225360-1229408 Arabidopsis thaliana
AT3G04560 2.0kb downstream 2.0kb downstream 2000 false Chr3: 1225360-1227359 Arabidopsis thaliana
AT3G04560 5.0kb upstream 5.0kb upstream 7049 true Chr3: 1227360-1234408 Arabidopsis thaliana
AT3G04560 5.0kb upstream 5.0kb upstream 5000 false Chr3: 1229409-1234408 Arabidopsis thaliana
AT3G04560 5.0kb downstream 5.0kb downstream 7049 true Chr3: 1222360-1229408 Arabidopsis thaliana
AT3G04560 5.0kb downstream 5.0kb downstream 5000 false Chr3: 1222360-1227359 Arabidopsis thaliana
AT3G04560 10.0kb upstream 10.0kb upstream 12049 true Chr3: 1227360-1239408 Arabidopsis thaliana
AT3G04560 10.0kb upstream 10.0kb upstream 10000 false Chr3: 1229409-1239408 Arabidopsis thaliana
AT3G04560 10.0kb downstream 10.0kb downstream 12049 true Chr3: 1217360-1229408 Arabidopsis thaliana
AT3G04560 10.0kb downstream 10.0kb downstream 10000 false Chr3: 1217360-1227359 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373159 5261 Brassicaceae View MSA
123833471 5264 Brassicales-Malvales View MSA
124339379 5266 SBM View MSA
124242976 5268 Malvidae View MSA
124065517 5270 Rosid View MSA
123740331 5271 Pentapetalae View MSA
122789838 5272 Eudicot View MSA
122045899 5273 Angiosperm View MSA
121344385 5274 Embryophyte View MSA
123424865 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.516        
cufflinks 10.25        
cufflinks 5.297       Low
cufflinks 12.195       High
cufflinks 6.978        
cufflinks 9.299        

0 Strain