Gene : AT3G50280 A. thaliana TAIR10
Defline:  (1 of 7) 2.3.1.99 - Quinate O-hydroxycinnamoyltransferase / Hydroxycinnamoyl coenzyme A-quinate transferase Genomic Order:  4035
Name:  ? AT3G50280 Secondary Identifier:  ? PAC:19664437
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G50280 0.5kb upstream 0.5kb upstream 1832 true Chr3: 18637354-18639185 Arabidopsis thaliana
AT3G50280 0.5kb upstream 0.5kb upstream 500 false Chr3: 18637354-18637853 Arabidopsis thaliana
AT3G50280 0.5kb downstream 0.5kb downstream 1832 true Chr3: 18637854-18639685 Arabidopsis thaliana
AT3G50280 0.5kb downstream 0.5kb downstream 500 false Chr3: 18639186-18639685 Arabidopsis thaliana
AT3G50280 1.0kb upstream 1.0kb upstream 2332 true Chr3: 18636854-18639185 Arabidopsis thaliana
AT3G50280 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18636854-18637853 Arabidopsis thaliana
AT3G50280 1.0kb downstream 1.0kb downstream 2332 true Chr3: 18637854-18640185 Arabidopsis thaliana
AT3G50280 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18639186-18640185 Arabidopsis thaliana
AT3G50280 2.0kb upstream 2.0kb upstream 3332 true Chr3: 18635854-18639185 Arabidopsis thaliana
AT3G50280 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18635854-18637853 Arabidopsis thaliana
AT3G50280 2.0kb downstream 2.0kb downstream 3332 true Chr3: 18637854-18641185 Arabidopsis thaliana
AT3G50280 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18639186-18641185 Arabidopsis thaliana
AT3G50280 5.0kb upstream 5.0kb upstream 6332 true Chr3: 18632854-18639185 Arabidopsis thaliana
AT3G50280 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18632854-18637853 Arabidopsis thaliana
AT3G50280 5.0kb downstream 5.0kb downstream 6332 true Chr3: 18637854-18644185 Arabidopsis thaliana
AT3G50280 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18639186-18644185 Arabidopsis thaliana
AT3G50280 10.0kb upstream 10.0kb upstream 11332 true Chr3: 18627854-18639185 Arabidopsis thaliana
AT3G50280 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18627854-18637853 Arabidopsis thaliana
AT3G50280 10.0kb downstream 10.0kb downstream 11332 true Chr3: 18637854-18649185 Arabidopsis thaliana
AT3G50280 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18639186-18649185 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381292 5261 Brassicaceae View MSA
123841407 5264 Brassicales-Malvales View MSA
124349927 5266 SBM View MSA
124250776 5268 Malvidae View MSA
124061050 5270 Rosid View MSA
123747860 5271 Pentapetalae View MSA
122791254 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.234        
cufflinks 16.726       High
cufflinks 2.361       Low
cufflinks 20.443       High
cufflinks 4.12        
cufflinks 7.413        

0 Strain