Gene : AT3G50190 A. thaliana TAIR10
Defline:  (1 of 26) PF03140 - Plant protein of unknown function (DUF247) Genomic Order:  4026
Name:  ? AT3G50190 Secondary Identifier:  ? PAC:19661229
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G50190 0.5kb upstream 0.5kb upstream 2556 true Chr3: 18609114-18611669 Arabidopsis thaliana
AT3G50190 0.5kb upstream 0.5kb upstream 500 false Chr3: 18611170-18611669 Arabidopsis thaliana
AT3G50190 0.5kb downstream 0.5kb downstream 2556 true Chr3: 18608614-18611169 Arabidopsis thaliana
AT3G50190 0.5kb downstream 0.5kb downstream 500 false Chr3: 18608614-18609113 Arabidopsis thaliana
AT3G50190 1.0kb upstream 1.0kb upstream 3056 true Chr3: 18609114-18612169 Arabidopsis thaliana
AT3G50190 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18611170-18612169 Arabidopsis thaliana
AT3G50190 1.0kb downstream 1.0kb downstream 3056 true Chr3: 18608114-18611169 Arabidopsis thaliana
AT3G50190 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18608114-18609113 Arabidopsis thaliana
AT3G50190 2.0kb upstream 2.0kb upstream 4056 true Chr3: 18609114-18613169 Arabidopsis thaliana
AT3G50190 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18611170-18613169 Arabidopsis thaliana
AT3G50190 2.0kb downstream 2.0kb downstream 4056 true Chr3: 18607114-18611169 Arabidopsis thaliana
AT3G50190 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18607114-18609113 Arabidopsis thaliana
AT3G50190 5.0kb upstream 5.0kb upstream 7056 true Chr3: 18609114-18616169 Arabidopsis thaliana
AT3G50190 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18611170-18616169 Arabidopsis thaliana
AT3G50190 5.0kb downstream 5.0kb downstream 7056 true Chr3: 18604114-18611169 Arabidopsis thaliana
AT3G50190 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18604114-18609113 Arabidopsis thaliana
AT3G50190 10.0kb upstream 10.0kb upstream 12056 true Chr3: 18609114-18621169 Arabidopsis thaliana
AT3G50190 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18611170-18621169 Arabidopsis thaliana
AT3G50190 10.0kb downstream 10.0kb downstream 12056 true Chr3: 18599114-18611169 Arabidopsis thaliana
AT3G50190 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18599114-18609113 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122329940 5261 Brassicaceae Singleton cluster - no MSA
123771218 5264 Brassicales-Malvales Singleton cluster - no MSA
124269750 5266 SBM Singleton cluster - no MSA
124255137 5268 Malvidae View MSA
124052010 5270 Rosid View MSA
123620379 5271 Pentapetalae View MSA
122654785 5272 Eudicot View MSA
122051031 5273 Angiosperm View MSA
121351531 5274 Embryophyte View MSA
123382209 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.167     Low  
cufflinks 2.305        
cufflinks 0.054     Low Low
cufflinks 2.623        
cufflinks 0.048     Low Low
cufflinks 3.412        

0 Strain