Gene : AT3G49640 A. thaliana TAIR10
Defline:  (1 of 1) 1.3.1.91 - tRNA-dihydrouridine(20) synthase (NAD(P)(+)) / tRNA-dihydrouridine synthase 2 Genomic Order:  3964
Name:  ? AT3G49640 Secondary Identifier:  ? PAC:19665022
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G49640 0.5kb upstream 0.5kb upstream 3064 true Chr3: 18400306-18403369 Arabidopsis thaliana
AT3G49640 0.5kb upstream 0.5kb upstream 500 false Chr3: 18402870-18403369 Arabidopsis thaliana
AT3G49640 0.5kb downstream 0.5kb downstream 3064 true Chr3: 18399806-18402869 Arabidopsis thaliana
AT3G49640 0.5kb downstream 0.5kb downstream 500 false Chr3: 18399806-18400305 Arabidopsis thaliana
AT3G49640 1.0kb upstream 1.0kb upstream 3564 true Chr3: 18400306-18403869 Arabidopsis thaliana
AT3G49640 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18402870-18403869 Arabidopsis thaliana
AT3G49640 1.0kb downstream 1.0kb downstream 3564 true Chr3: 18399306-18402869 Arabidopsis thaliana
AT3G49640 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18399306-18400305 Arabidopsis thaliana
AT3G49640 2.0kb upstream 2.0kb upstream 4564 true Chr3: 18400306-18404869 Arabidopsis thaliana
AT3G49640 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18402870-18404869 Arabidopsis thaliana
AT3G49640 2.0kb downstream 2.0kb downstream 4564 true Chr3: 18398306-18402869 Arabidopsis thaliana
AT3G49640 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18398306-18400305 Arabidopsis thaliana
AT3G49640 5.0kb upstream 5.0kb upstream 7564 true Chr3: 18400306-18407869 Arabidopsis thaliana
AT3G49640 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18402870-18407869 Arabidopsis thaliana
AT3G49640 5.0kb downstream 5.0kb downstream 7564 true Chr3: 18395306-18402869 Arabidopsis thaliana
AT3G49640 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18395306-18400305 Arabidopsis thaliana
AT3G49640 10.0kb upstream 10.0kb upstream 12564 true Chr3: 18400306-18412869 Arabidopsis thaliana
AT3G49640 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18402870-18412869 Arabidopsis thaliana
AT3G49640 10.0kb downstream 10.0kb downstream 12564 true Chr3: 18390306-18402869 Arabidopsis thaliana
AT3G49640 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18390306-18400305 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379495 5261 Brassicaceae View MSA
123837135 5264 Brassicales-Malvales View MSA
124347052 5266 SBM View MSA
124246829 5268 Malvidae View MSA
124050521 5270 Rosid View MSA
123743587 5271 Pentapetalae View MSA
122794632 5272 Eudicot View MSA
122048922 5273 Angiosperm View MSA
121348222 5274 Embryophyte View MSA
123428585 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.49        
cufflinks 2.818        
cufflinks 1.987       Low
cufflinks 3.108       High
cufflinks 2.053       Low
cufflinks 2.655        

0 Strain