Gene : AT3G49720 A. thaliana TAIR10
Genomic Order:  3973 Name:  ? AT3G49720
Secondary Identifier:  ? PAC:19662171
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G49720 0.5kb upstream 0.5kb upstream 2696 true Chr3: 18440003-18442698 Arabidopsis thaliana
AT3G49720 0.5kb upstream 0.5kb upstream 500 false Chr3: 18442199-18442698 Arabidopsis thaliana
AT3G49720 0.5kb downstream 0.5kb downstream 2696 true Chr3: 18439503-18442198 Arabidopsis thaliana
AT3G49720 0.5kb downstream 0.5kb downstream 500 false Chr3: 18439503-18440002 Arabidopsis thaliana
AT3G49720 1.0kb upstream 1.0kb upstream 3196 true Chr3: 18440003-18443198 Arabidopsis thaliana
AT3G49720 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18442199-18443198 Arabidopsis thaliana
AT3G49720 1.0kb downstream 1.0kb downstream 3196 true Chr3: 18439003-18442198 Arabidopsis thaliana
AT3G49720 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18439003-18440002 Arabidopsis thaliana
AT3G49720 2.0kb upstream 2.0kb upstream 4196 true Chr3: 18440003-18444198 Arabidopsis thaliana
AT3G49720 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18442199-18444198 Arabidopsis thaliana
AT3G49720 2.0kb downstream 2.0kb downstream 4196 true Chr3: 18438003-18442198 Arabidopsis thaliana
AT3G49720 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18438003-18440002 Arabidopsis thaliana
AT3G49720 5.0kb upstream 5.0kb upstream 7196 true Chr3: 18440003-18447198 Arabidopsis thaliana
AT3G49720 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18442199-18447198 Arabidopsis thaliana
AT3G49720 5.0kb downstream 5.0kb downstream 7196 true Chr3: 18435003-18442198 Arabidopsis thaliana
AT3G49720 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18435003-18440002 Arabidopsis thaliana
AT3G49720 10.0kb upstream 10.0kb upstream 12196 true Chr3: 18440003-18452198 Arabidopsis thaliana
AT3G49720 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18442199-18452198 Arabidopsis thaliana
AT3G49720 10.0kb downstream 10.0kb downstream 12196 true Chr3: 18430003-18442198 Arabidopsis thaliana
AT3G49720 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18430003-18440002 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373455 5261 Brassicaceae View MSA
123840453 5264 Brassicales-Malvales View MSA
124351193 5266 SBM View MSA
124248309 5268 Malvidae View MSA
124071279 5270 Rosid View MSA
123741561 5271 Pentapetalae View MSA
122793729 5272 Eudicot View MSA
122046914 5273 Angiosperm View MSA
121346095 5274 Embryophyte View MSA
123380327 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.54        
cufflinks 34.673     High  
cufflinks 18.954        
cufflinks 28.712        
cufflinks 15.272       Low
cufflinks 41.392     High High

0 Strain