Gene : AT3G49080 A. thaliana TAIR10
Defline:  (1 of 1) PTHR21569//PTHR21569:SF1 - RIBOSOMAL PROTEIN S9 // 28S RIBOSOMAL PROTEIN S9, MITOCHONDRIAL Genomic Order:  3904
Name:  ? AT3G49080 Secondary Identifier:  ? PAC:19660754
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G49080 0.5kb upstream 0.5kb upstream 3074 true Chr3: 18194154-18197227 Arabidopsis thaliana
AT3G49080 0.5kb upstream 0.5kb upstream 500 false Chr3: 18196728-18197227 Arabidopsis thaliana
AT3G49080 0.5kb downstream 0.5kb downstream 3074 true Chr3: 18193654-18196727 Arabidopsis thaliana
AT3G49080 0.5kb downstream 0.5kb downstream 500 false Chr3: 18193654-18194153 Arabidopsis thaliana
AT3G49080 1.0kb upstream 1.0kb upstream 3574 true Chr3: 18194154-18197727 Arabidopsis thaliana
AT3G49080 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18196728-18197727 Arabidopsis thaliana
AT3G49080 1.0kb downstream 1.0kb downstream 3574 true Chr3: 18193154-18196727 Arabidopsis thaliana
AT3G49080 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18193154-18194153 Arabidopsis thaliana
AT3G49080 2.0kb upstream 2.0kb upstream 4574 true Chr3: 18194154-18198727 Arabidopsis thaliana
AT3G49080 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18196728-18198727 Arabidopsis thaliana
AT3G49080 2.0kb downstream 2.0kb downstream 4574 true Chr3: 18192154-18196727 Arabidopsis thaliana
AT3G49080 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18192154-18194153 Arabidopsis thaliana
AT3G49080 5.0kb upstream 5.0kb upstream 7574 true Chr3: 18194154-18201727 Arabidopsis thaliana
AT3G49080 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18196728-18201727 Arabidopsis thaliana
AT3G49080 5.0kb downstream 5.0kb downstream 7574 true Chr3: 18189154-18196727 Arabidopsis thaliana
AT3G49080 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18189154-18194153 Arabidopsis thaliana
AT3G49080 10.0kb upstream 10.0kb upstream 12574 true Chr3: 18194154-18206727 Arabidopsis thaliana
AT3G49080 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18196728-18206727 Arabidopsis thaliana
AT3G49080 10.0kb downstream 10.0kb downstream 12574 true Chr3: 18184154-18196727 Arabidopsis thaliana
AT3G49080 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18184154-18194153 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361019 5261 Brassicaceae View MSA
123829342 5264 Brassicales-Malvales View MSA
124347717 5266 SBM View MSA
124236993 5268 Malvidae View MSA
124061240 5270 Rosid View MSA
123740184 5271 Pentapetalae View MSA
122793523 5272 Eudicot View MSA
122042046 5273 Angiosperm View MSA
121350206 5274 Embryophyte View MSA
123426879 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.873        
cufflinks 16.332        
cufflinks 10.9        
cufflinks 17.281        
cufflinks 8.89       Low
cufflinks 20.596       High

0 Strain