Gene : NPC6 A. thaliana TAIR10
Primary Identifier:  ? AT3G48610 Defline:  (1 of 1) PTHR31956//PTHR31956:SF2 - FAMILY NOT NAMED // NON-SPECIFIC PHOSPHOLIPASE C6
Genomic Order:  3856 Name:  ? AT3G48610
Secondary Identifier:  ? PAC:19662638
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48610 0.5kb upstream 0.5kb upstream 3038 true Chr3: 18011545-18014582 Arabidopsis thaliana
AT3G48610 0.5kb upstream 0.5kb upstream 500 false Chr3: 18014083-18014582 Arabidopsis thaliana
AT3G48610 0.5kb downstream 0.5kb downstream 3038 true Chr3: 18011045-18014082 Arabidopsis thaliana
AT3G48610 0.5kb downstream 0.5kb downstream 500 false Chr3: 18011045-18011544 Arabidopsis thaliana
AT3G48610 1.0kb upstream 1.0kb upstream 3538 true Chr3: 18011545-18015082 Arabidopsis thaliana
AT3G48610 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18014083-18015082 Arabidopsis thaliana
AT3G48610 1.0kb downstream 1.0kb downstream 3538 true Chr3: 18010545-18014082 Arabidopsis thaliana
AT3G48610 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18010545-18011544 Arabidopsis thaliana
AT3G48610 2.0kb upstream 2.0kb upstream 4538 true Chr3: 18011545-18016082 Arabidopsis thaliana
AT3G48610 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18014083-18016082 Arabidopsis thaliana
AT3G48610 2.0kb downstream 2.0kb downstream 4538 true Chr3: 18009545-18014082 Arabidopsis thaliana
AT3G48610 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18009545-18011544 Arabidopsis thaliana
AT3G48610 5.0kb upstream 5.0kb upstream 7538 true Chr3: 18011545-18019082 Arabidopsis thaliana
AT3G48610 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18014083-18019082 Arabidopsis thaliana
AT3G48610 5.0kb downstream 5.0kb downstream 7538 true Chr3: 18006545-18014082 Arabidopsis thaliana
AT3G48610 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18006545-18011544 Arabidopsis thaliana
AT3G48610 10.0kb upstream 10.0kb upstream 12538 true Chr3: 18011545-18024082 Arabidopsis thaliana
AT3G48610 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18014083-18024082 Arabidopsis thaliana
AT3G48610 10.0kb downstream 10.0kb downstream 12538 true Chr3: 18001545-18014082 Arabidopsis thaliana
AT3G48610 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18001545-18011544 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375838 5261 Brassicaceae View MSA
123835307 5264 Brassicales-Malvales View MSA
124339608 5266 SBM View MSA
124241926 5268 Malvidae View MSA
124067209 5270 Rosid View MSA
123741370 5271 Pentapetalae View MSA
122788110 5272 Eudicot View MSA
122046381 5273 Angiosperm View MSA
121310596 5274 Embryophyte View MSA
123348041 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.816       Low
cufflinks 13.085        
cufflinks 11.583        
cufflinks 13.04        
cufflinks 10.436        
cufflinks 13.417        

0 Strain