Gene : AT3G47200 A. thaliana TAIR10
Defline:  (1 of 8) PTHR31549//PTHR31549:SF3 - FAMILY NOT NAMED // EMB|CAB72473.1 Genomic Order:  3709
Name:  ? AT3G47200 Secondary Identifier:  ? PAC:19661789
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G47200 0.5kb upstream 0.5kb upstream 2236 true Chr3: 17377500-17379735 Arabidopsis thaliana
AT3G47200 0.5kb upstream 0.5kb upstream 500 false Chr3: 17379236-17379735 Arabidopsis thaliana
AT3G47200 0.5kb downstream 0.5kb downstream 2236 true Chr3: 17377000-17379235 Arabidopsis thaliana
AT3G47200 0.5kb downstream 0.5kb downstream 500 false Chr3: 17377000-17377499 Arabidopsis thaliana
AT3G47200 1.0kb upstream 1.0kb upstream 2736 true Chr3: 17377500-17380235 Arabidopsis thaliana
AT3G47200 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17379236-17380235 Arabidopsis thaliana
AT3G47200 1.0kb downstream 1.0kb downstream 2736 true Chr3: 17376500-17379235 Arabidopsis thaliana
AT3G47200 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17376500-17377499 Arabidopsis thaliana
AT3G47200 2.0kb upstream 2.0kb upstream 3736 true Chr3: 17377500-17381235 Arabidopsis thaliana
AT3G47200 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17379236-17381235 Arabidopsis thaliana
AT3G47200 2.0kb downstream 2.0kb downstream 3736 true Chr3: 17375500-17379235 Arabidopsis thaliana
AT3G47200 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17375500-17377499 Arabidopsis thaliana
AT3G47200 5.0kb upstream 5.0kb upstream 6736 true Chr3: 17377500-17384235 Arabidopsis thaliana
AT3G47200 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17379236-17384235 Arabidopsis thaliana
AT3G47200 5.0kb downstream 5.0kb downstream 6736 true Chr3: 17372500-17379235 Arabidopsis thaliana
AT3G47200 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17372500-17377499 Arabidopsis thaliana
AT3G47200 10.0kb upstream 10.0kb upstream 11736 true Chr3: 17377500-17389235 Arabidopsis thaliana
AT3G47200 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17379236-17389235 Arabidopsis thaliana
AT3G47200 10.0kb downstream 10.0kb downstream 11736 true Chr3: 17367500-17379235 Arabidopsis thaliana
AT3G47200 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17367500-17377499 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122329995 5261 Brassicaceae Singleton cluster - no MSA
123771271 5264 Brassicales-Malvales Singleton cluster - no MSA
124269802 5266 SBM Singleton cluster - no MSA
124255136 5268 Malvidae View MSA
124074599 5270 Rosid View MSA
123753721 5271 Pentapetalae View MSA
122797892 5272 Eudicot View MSA
122051031 5273 Angiosperm View MSA
121351531 5274 Embryophyte View MSA
123382209 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 8.144        
cufflinks 0.011     Low Low
cufflinks 10.974        
cufflinks 0.045     Low  
cufflinks 8.3        

0 Strain