Gene : LHCA4 A. thaliana TAIR10
Primary Identifier:  ? AT3G47470 Defline:  (1 of 1) K08910 - light-harvesting complex I chlorophyll a/b binding protein 4 (LHCA4)
Genomic Order:  3730 Name:  ? AT3G47470
Secondary Identifier:  ? PAC:19661903
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G47470 0.5kb upstream 0.5kb upstream 2162 true Chr3: 17493372-17495533 Arabidopsis thaliana
AT3G47470 0.5kb upstream 0.5kb upstream 500 false Chr3: 17495034-17495533 Arabidopsis thaliana
AT3G47470 0.5kb downstream 0.5kb downstream 2162 true Chr3: 17492872-17495033 Arabidopsis thaliana
AT3G47470 0.5kb downstream 0.5kb downstream 500 false Chr3: 17492872-17493371 Arabidopsis thaliana
AT3G47470 1.0kb upstream 1.0kb upstream 2662 true Chr3: 17493372-17496033 Arabidopsis thaliana
AT3G47470 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17495034-17496033 Arabidopsis thaliana
AT3G47470 1.0kb downstream 1.0kb downstream 2662 true Chr3: 17492372-17495033 Arabidopsis thaliana
AT3G47470 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17492372-17493371 Arabidopsis thaliana
AT3G47470 2.0kb upstream 2.0kb upstream 3662 true Chr3: 17493372-17497033 Arabidopsis thaliana
AT3G47470 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17495034-17497033 Arabidopsis thaliana
AT3G47470 2.0kb downstream 2.0kb downstream 3662 true Chr3: 17491372-17495033 Arabidopsis thaliana
AT3G47470 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17491372-17493371 Arabidopsis thaliana
AT3G47470 5.0kb upstream 5.0kb upstream 6662 true Chr3: 17493372-17500033 Arabidopsis thaliana
AT3G47470 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17495034-17500033 Arabidopsis thaliana
AT3G47470 5.0kb downstream 5.0kb downstream 6662 true Chr3: 17488372-17495033 Arabidopsis thaliana
AT3G47470 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17488372-17493371 Arabidopsis thaliana
AT3G47470 10.0kb upstream 10.0kb upstream 11662 true Chr3: 17493372-17505033 Arabidopsis thaliana
AT3G47470 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17495034-17505033 Arabidopsis thaliana
AT3G47470 10.0kb downstream 10.0kb downstream 11662 true Chr3: 17483372-17495033 Arabidopsis thaliana
AT3G47470 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17483372-17493371 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372804 5261 Brassicaceae View MSA
123834792 5264 Brassicales-Malvales View MSA
124341061 5266 SBM View MSA
124239114 5268 Malvidae View MSA
124068607 5270 Rosid View MSA
123738583 5271 Pentapetalae View MSA
122789063 5272 Eudicot View MSA
122041547 5273 Angiosperm View MSA
121346524 5274 Embryophyte View MSA
123425939 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1116.578     High  
cufflinks 34.995     High  
cufflinks 2864.064     High  
cufflinks 35.917     High  
cufflinks 3583.291     High High
cufflinks 10.123       Low

0 Strain