Gene : AT3G46870 A. thaliana TAIR10
Defline:  (1 of 423) PF13041 - PPR repeat family (PPR_2) Genomic Order:  3674
Name:  ? AT3G46870 Secondary Identifier:  ? PAC:19663606
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G46870 0.5kb upstream 0.5kb upstream 1993 true Chr3: 17262483-17264475 Arabidopsis thaliana
AT3G46870 0.5kb upstream 0.5kb upstream 500 false Chr3: 17262483-17262982 Arabidopsis thaliana
AT3G46870 0.5kb downstream 0.5kb downstream 1993 true Chr3: 17262983-17264975 Arabidopsis thaliana
AT3G46870 0.5kb downstream 0.5kb downstream 500 false Chr3: 17264476-17264975 Arabidopsis thaliana
AT3G46870 1.0kb upstream 1.0kb upstream 2493 true Chr3: 17261983-17264475 Arabidopsis thaliana
AT3G46870 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17261983-17262982 Arabidopsis thaliana
AT3G46870 1.0kb downstream 1.0kb downstream 2493 true Chr3: 17262983-17265475 Arabidopsis thaliana
AT3G46870 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17264476-17265475 Arabidopsis thaliana
AT3G46870 2.0kb upstream 2.0kb upstream 3493 true Chr3: 17260983-17264475 Arabidopsis thaliana
AT3G46870 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17260983-17262982 Arabidopsis thaliana
AT3G46870 2.0kb downstream 2.0kb downstream 3493 true Chr3: 17262983-17266475 Arabidopsis thaliana
AT3G46870 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17264476-17266475 Arabidopsis thaliana
AT3G46870 5.0kb upstream 5.0kb upstream 6493 true Chr3: 17257983-17264475 Arabidopsis thaliana
AT3G46870 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17257983-17262982 Arabidopsis thaliana
AT3G46870 5.0kb downstream 5.0kb downstream 6493 true Chr3: 17262983-17269475 Arabidopsis thaliana
AT3G46870 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17264476-17269475 Arabidopsis thaliana
AT3G46870 10.0kb upstream 10.0kb upstream 11493 true Chr3: 17252983-17264475 Arabidopsis thaliana
AT3G46870 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17252983-17262982 Arabidopsis thaliana
AT3G46870 10.0kb downstream 10.0kb downstream 11493 true Chr3: 17262983-17274475 Arabidopsis thaliana
AT3G46870 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17264476-17274475 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371552 5261 Brassicaceae View MSA
123831999 5264 Brassicales-Malvales View MSA
124344462 5266 SBM View MSA
124242066 5268 Malvidae View MSA
124067631 5270 Rosid View MSA
123738465 5271 Pentapetalae View MSA
122790131 5272 Eudicot View MSA
122044559 5273 Angiosperm View MSA
121348230 5274 Embryophyte View MSA
123380783 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.127       High
cufflinks 2.726       Low
cufflinks 3.983        
cufflinks 3.111        
cufflinks 3.646        
cufflinks 3.494        

0 Strain