Gene : AT3G46620 A. thaliana TAIR10
Defline:  (1 of 2) PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  3648
Name:  ? AT3G46620 Secondary Identifier:  ? PAC:19659661
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G46620 0.5kb upstream 0.5kb upstream 1871 true Chr3: 17178697-17180567 Arabidopsis thaliana
AT3G46620 0.5kb upstream 0.5kb upstream 500 false Chr3: 17180068-17180567 Arabidopsis thaliana
AT3G46620 0.5kb downstream 0.5kb downstream 1871 true Chr3: 17178197-17180067 Arabidopsis thaliana
AT3G46620 0.5kb downstream 0.5kb downstream 500 false Chr3: 17178197-17178696 Arabidopsis thaliana
AT3G46620 1.0kb upstream 1.0kb upstream 2371 true Chr3: 17178697-17181067 Arabidopsis thaliana
AT3G46620 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17180068-17181067 Arabidopsis thaliana
AT3G46620 1.0kb downstream 1.0kb downstream 2371 true Chr3: 17177697-17180067 Arabidopsis thaliana
AT3G46620 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17177697-17178696 Arabidopsis thaliana
AT3G46620 2.0kb upstream 2.0kb upstream 3371 true Chr3: 17178697-17182067 Arabidopsis thaliana
AT3G46620 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17180068-17182067 Arabidopsis thaliana
AT3G46620 2.0kb downstream 2.0kb downstream 3371 true Chr3: 17176697-17180067 Arabidopsis thaliana
AT3G46620 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17176697-17178696 Arabidopsis thaliana
AT3G46620 5.0kb upstream 5.0kb upstream 6371 true Chr3: 17178697-17185067 Arabidopsis thaliana
AT3G46620 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17180068-17185067 Arabidopsis thaliana
AT3G46620 5.0kb downstream 5.0kb downstream 6371 true Chr3: 17173697-17180067 Arabidopsis thaliana
AT3G46620 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17173697-17178696 Arabidopsis thaliana
AT3G46620 10.0kb upstream 10.0kb upstream 11371 true Chr3: 17178697-17190067 Arabidopsis thaliana
AT3G46620 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17180068-17190067 Arabidopsis thaliana
AT3G46620 10.0kb downstream 10.0kb downstream 11371 true Chr3: 17168697-17180067 Arabidopsis thaliana
AT3G46620 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17168697-17178696 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374512 5261 Brassicaceae View MSA
123838117 5264 Brassicales-Malvales View MSA
124341456 5266 SBM View MSA
124249586 5268 Malvidae View MSA
124073026 5270 Rosid View MSA
123745848 5271 Pentapetalae View MSA
122795555 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.917        
cufflinks 190.798     High  
cufflinks 45.579     High  
cufflinks 183.44     High  
cufflinks 14.625       Low
cufflinks 217.956     High  

0 Strain