Gene : AT3G59980 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11586:SF18 - NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN Genomic Order:  5054
Name:  ? AT3G59980 Secondary Identifier:  ? PAC:19659613
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G59980 0.5kb upstream 0.5kb upstream 1898 true Chr3: 22154244-22156141 Arabidopsis thaliana
AT3G59980 0.5kb upstream 0.5kb upstream 500 false Chr3: 22155642-22156141 Arabidopsis thaliana
AT3G59980 0.5kb downstream 0.5kb downstream 1898 true Chr3: 22153744-22155641 Arabidopsis thaliana
AT3G59980 0.5kb downstream 0.5kb downstream 500 false Chr3: 22153744-22154243 Arabidopsis thaliana
AT3G59980 1.0kb upstream 1.0kb upstream 2398 true Chr3: 22154244-22156641 Arabidopsis thaliana
AT3G59980 1.0kb upstream 1.0kb upstream 1000 false Chr3: 22155642-22156641 Arabidopsis thaliana
AT3G59980 1.0kb downstream 1.0kb downstream 2398 true Chr3: 22153244-22155641 Arabidopsis thaliana
AT3G59980 1.0kb downstream 1.0kb downstream 1000 false Chr3: 22153244-22154243 Arabidopsis thaliana
AT3G59980 2.0kb upstream 2.0kb upstream 3398 true Chr3: 22154244-22157641 Arabidopsis thaliana
AT3G59980 2.0kb upstream 2.0kb upstream 2000 false Chr3: 22155642-22157641 Arabidopsis thaliana
AT3G59980 2.0kb downstream 2.0kb downstream 3398 true Chr3: 22152244-22155641 Arabidopsis thaliana
AT3G59980 2.0kb downstream 2.0kb downstream 2000 false Chr3: 22152244-22154243 Arabidopsis thaliana
AT3G59980 5.0kb upstream 5.0kb upstream 6398 true Chr3: 22154244-22160641 Arabidopsis thaliana
AT3G59980 5.0kb upstream 5.0kb upstream 5000 false Chr3: 22155642-22160641 Arabidopsis thaliana
AT3G59980 5.0kb downstream 5.0kb downstream 6398 true Chr3: 22149244-22155641 Arabidopsis thaliana
AT3G59980 5.0kb downstream 5.0kb downstream 5000 false Chr3: 22149244-22154243 Arabidopsis thaliana
AT3G59980 10.0kb upstream 10.0kb upstream 11398 true Chr3: 22154244-22165641 Arabidopsis thaliana
AT3G59980 10.0kb upstream 10.0kb upstream 10000 false Chr3: 22155642-22165641 Arabidopsis thaliana
AT3G59980 10.0kb downstream 10.0kb downstream 11398 true Chr3: 22144244-22155641 Arabidopsis thaliana
AT3G59980 10.0kb downstream 10.0kb downstream 10000 false Chr3: 22144244-22154243 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364914 5261 Brassicaceae View MSA
123833284 5264 Brassicales-Malvales View MSA
124344379 5266 SBM View MSA
124243491 5268 Malvidae View MSA
124064095 5270 Rosid View MSA
123736629 5271 Pentapetalae View MSA
122792707 5272 Eudicot View MSA
122045155 5273 Angiosperm View MSA
121346605 5274 Embryophyte View MSA
123427531 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.685     High  
cufflinks 6.865        
cufflinks 37.991     High High
cufflinks 7.095        
cufflinks 24.141        
cufflinks 5.762       Low

0 Strain