Gene : AT3G58820 A. thaliana TAIR10
Defline:  (1 of 43) PTHR31639//PTHR31639:SF6 - FAMILY NOT NAMED // FBD DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  4938
Name:  ? AT3G58820 Secondary Identifier:  ? PAC:19659192
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G58820 0.5kb upstream 0.5kb upstream 2583 true Chr3: 21752033-21754615 Arabidopsis thaliana
AT3G58820 0.5kb upstream 0.5kb upstream 500 false Chr3: 21752033-21752532 Arabidopsis thaliana
AT3G58820 0.5kb downstream 0.5kb downstream 2583 true Chr3: 21752533-21755115 Arabidopsis thaliana
AT3G58820 0.5kb downstream 0.5kb downstream 500 false Chr3: 21754616-21755115 Arabidopsis thaliana
AT3G58820 1.0kb upstream 1.0kb upstream 3083 true Chr3: 21751533-21754615 Arabidopsis thaliana
AT3G58820 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21751533-21752532 Arabidopsis thaliana
AT3G58820 1.0kb downstream 1.0kb downstream 3083 true Chr3: 21752533-21755615 Arabidopsis thaliana
AT3G58820 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21754616-21755615 Arabidopsis thaliana
AT3G58820 2.0kb upstream 2.0kb upstream 4083 true Chr3: 21750533-21754615 Arabidopsis thaliana
AT3G58820 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21750533-21752532 Arabidopsis thaliana
AT3G58820 2.0kb downstream 2.0kb downstream 4083 true Chr3: 21752533-21756615 Arabidopsis thaliana
AT3G58820 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21754616-21756615 Arabidopsis thaliana
AT3G58820 5.0kb upstream 5.0kb upstream 7083 true Chr3: 21747533-21754615 Arabidopsis thaliana
AT3G58820 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21747533-21752532 Arabidopsis thaliana
AT3G58820 5.0kb downstream 5.0kb downstream 7083 true Chr3: 21752533-21759615 Arabidopsis thaliana
AT3G58820 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21754616-21759615 Arabidopsis thaliana
AT3G58820 10.0kb upstream 10.0kb upstream 12083 true Chr3: 21742533-21754615 Arabidopsis thaliana
AT3G58820 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21742533-21752532 Arabidopsis thaliana
AT3G58820 10.0kb downstream 10.0kb downstream 12083 true Chr3: 21752533-21764615 Arabidopsis thaliana
AT3G58820 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21754616-21764615 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373689 5261 Brassicaceae View MSA
123800601 5264 Brassicales-Malvales View MSA
124350537 5266 SBM View MSA
124254039 5268 Malvidae View MSA
124073024 5270 Rosid View MSA
123753592 5271 Pentapetalae View MSA
122797964 5272 Eudicot View MSA
122050940 5273 Angiosperm View MSA
121351679 5274 Embryophyte View MSA
123382274 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.486        
cufflinks 3.217       High
cufflinks 1.628        
cufflinks 2.684        
cufflinks 1.315       Low
cufflinks 2.189        

0 Strain