Gene : AT3G58490 A. thaliana TAIR10
Defline:  (1 of 1) PTHR14969:SF3 - DIHYDROSPHINGOSINE 1-PHOSPHATE PHOSPHATASE LCB3-RELATED Genomic Order:  4904
Name:  ? AT3G58490 Secondary Identifier:  ? PAC:19663887
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRIGLSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G58490 0.5kb upstream 0.5kb upstream 2795 true Chr3: 21632312-21635106 Arabidopsis thaliana
AT3G58490 0.5kb upstream 0.5kb upstream 500 false Chr3: 21632312-21632811 Arabidopsis thaliana
AT3G58490 0.5kb downstream 0.5kb downstream 2795 true Chr3: 21632812-21635606 Arabidopsis thaliana
AT3G58490 0.5kb downstream 0.5kb downstream 500 false Chr3: 21635107-21635606 Arabidopsis thaliana
AT3G58490 1.0kb upstream 1.0kb upstream 3295 true Chr3: 21631812-21635106 Arabidopsis thaliana
AT3G58490 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21631812-21632811 Arabidopsis thaliana
AT3G58490 1.0kb downstream 1.0kb downstream 3295 true Chr3: 21632812-21636106 Arabidopsis thaliana
AT3G58490 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21635107-21636106 Arabidopsis thaliana
AT3G58490 2.0kb upstream 2.0kb upstream 4295 true Chr3: 21630812-21635106 Arabidopsis thaliana
AT3G58490 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21630812-21632811 Arabidopsis thaliana
AT3G58490 2.0kb downstream 2.0kb downstream 4295 true Chr3: 21632812-21637106 Arabidopsis thaliana
AT3G58490 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21635107-21637106 Arabidopsis thaliana
AT3G58490 5.0kb upstream 5.0kb upstream 7295 true Chr3: 21627812-21635106 Arabidopsis thaliana
AT3G58490 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21627812-21632811 Arabidopsis thaliana
AT3G58490 5.0kb downstream 5.0kb downstream 7295 true Chr3: 21632812-21640106 Arabidopsis thaliana
AT3G58490 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21635107-21640106 Arabidopsis thaliana
AT3G58490 10.0kb upstream 10.0kb upstream 12295 true Chr3: 21622812-21635106 Arabidopsis thaliana
AT3G58490 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21622812-21632811 Arabidopsis thaliana
AT3G58490 10.0kb downstream 10.0kb downstream 12295 true Chr3: 21632812-21645106 Arabidopsis thaliana
AT3G58490 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21635107-21645106 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367975 5261 Brassicaceae View MSA
123832821 5264 Brassicales-Malvales View MSA
124342995 5266 SBM View MSA
124241602 5268 Malvidae View MSA
124061101 5270 Rosid View MSA
123739708 5271 Pentapetalae View MSA
122787223 5272 Eudicot View MSA
122041787 5273 Angiosperm View MSA
121351488 5274 Embryophyte View MSA
123382186 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.627        
cufflinks 10.342       High
cufflinks 5.156       Low
cufflinks 9.732       High
cufflinks 6.006        
cufflinks 6.993        

0 Strain