Gene : AGL16 A. thaliana TAIR10
Primary Identifier:  ? AT3G57230 Defline:  (1 of 2) PTHR11945:SF147 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL16-RELATED
Genomic Order:  4777 Name:  ? AT3G57230
Secondary Identifier:  ? PAC:19665060
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G57230 0.5kb upstream 0.5kb upstream 4010 true Chr3: 21176923-21180932 Arabidopsis thaliana
AT3G57230 0.5kb upstream 0.5kb upstream 500 false Chr3: 21176923-21177422 Arabidopsis thaliana
AT3G57230 0.5kb downstream 0.5kb downstream 4010 true Chr3: 21177423-21181432 Arabidopsis thaliana
AT3G57230 0.5kb downstream 0.5kb downstream 500 false Chr3: 21180933-21181432 Arabidopsis thaliana
AT3G57230 1.0kb upstream 1.0kb upstream 4510 true Chr3: 21176423-21180932 Arabidopsis thaliana
AT3G57230 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21176423-21177422 Arabidopsis thaliana
AT3G57230 1.0kb downstream 1.0kb downstream 4510 true Chr3: 21177423-21181932 Arabidopsis thaliana
AT3G57230 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21180933-21181932 Arabidopsis thaliana
AT3G57230 2.0kb upstream 2.0kb upstream 5510 true Chr3: 21175423-21180932 Arabidopsis thaliana
AT3G57230 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21175423-21177422 Arabidopsis thaliana
AT3G57230 2.0kb downstream 2.0kb downstream 5510 true Chr3: 21177423-21182932 Arabidopsis thaliana
AT3G57230 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21180933-21182932 Arabidopsis thaliana
AT3G57230 5.0kb upstream 5.0kb upstream 8510 true Chr3: 21172423-21180932 Arabidopsis thaliana
AT3G57230 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21172423-21177422 Arabidopsis thaliana
AT3G57230 5.0kb downstream 5.0kb downstream 8510 true Chr3: 21177423-21185932 Arabidopsis thaliana
AT3G57230 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21180933-21185932 Arabidopsis thaliana
AT3G57230 10.0kb upstream 10.0kb upstream 13510 true Chr3: 21167423-21180932 Arabidopsis thaliana
AT3G57230 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21167423-21177422 Arabidopsis thaliana
AT3G57230 10.0kb downstream 10.0kb downstream 13510 true Chr3: 21177423-21190932 Arabidopsis thaliana
AT3G57230 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21180933-21190932 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368242 5261 Brassicaceae View MSA
123841544 5264 Brassicales-Malvales View MSA
124351591 5266 SBM View MSA
124253386 5268 Malvidae View MSA
124074630 5270 Rosid View MSA
123753664 5271 Pentapetalae View MSA
122797561 5272 Eudicot View MSA
122050867 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.713        
cufflinks 5.859        
cufflinks 2.685       Low
cufflinks 6.992       High
cufflinks 2.612       Low
cufflinks 5.186        

0 Strain