Gene : AT3G55840 A. thaliana TAIR10
Defline:  (1 of 2) PF07014//PF07231 - Hs1pro-1 protein C-terminus (Hs1pro-1_C) // Hs1pro-1 N-terminus (Hs1pro-1_N) Genomic Order:  4636
Name:  ? AT3G55840 Secondary Identifier:  ? PAC:19661568
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G55840 0.5kb upstream 0.5kb upstream 2372 true Chr3: 20716995-20719366 Arabidopsis thaliana
AT3G55840 0.5kb upstream 0.5kb upstream 500 false Chr3: 20718867-20719366 Arabidopsis thaliana
AT3G55840 0.5kb downstream 0.5kb downstream 2372 true Chr3: 20716495-20718866 Arabidopsis thaliana
AT3G55840 0.5kb downstream 0.5kb downstream 500 false Chr3: 20716495-20716994 Arabidopsis thaliana
AT3G55840 1.0kb upstream 1.0kb upstream 2872 true Chr3: 20716995-20719866 Arabidopsis thaliana
AT3G55840 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20718867-20719866 Arabidopsis thaliana
AT3G55840 1.0kb downstream 1.0kb downstream 2872 true Chr3: 20715995-20718866 Arabidopsis thaliana
AT3G55840 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20715995-20716994 Arabidopsis thaliana
AT3G55840 2.0kb upstream 2.0kb upstream 3872 true Chr3: 20716995-20720866 Arabidopsis thaliana
AT3G55840 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20718867-20720866 Arabidopsis thaliana
AT3G55840 2.0kb downstream 2.0kb downstream 3872 true Chr3: 20714995-20718866 Arabidopsis thaliana
AT3G55840 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20714995-20716994 Arabidopsis thaliana
AT3G55840 5.0kb upstream 5.0kb upstream 6872 true Chr3: 20716995-20723866 Arabidopsis thaliana
AT3G55840 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20718867-20723866 Arabidopsis thaliana
AT3G55840 5.0kb downstream 5.0kb downstream 6872 true Chr3: 20711995-20718866 Arabidopsis thaliana
AT3G55840 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20711995-20716994 Arabidopsis thaliana
AT3G55840 10.0kb upstream 10.0kb upstream 11872 true Chr3: 20716995-20728866 Arabidopsis thaliana
AT3G55840 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20718867-20728866 Arabidopsis thaliana
AT3G55840 10.0kb downstream 10.0kb downstream 11872 true Chr3: 20706995-20718866 Arabidopsis thaliana
AT3G55840 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20706995-20716994 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367849 5261 Brassicaceae View MSA
123799432 5264 Brassicales-Malvales View MSA
124296953 5266 SBM View MSA
124148968 5268 Malvidae View MSA
123874866 5270 Rosid View MSA
123458780 5271 Pentapetalae View MSA
122494178 5272 Eudicot View MSA
122043569 5273 Angiosperm View MSA
121344481 5274 Embryophyte View MSA
123380055 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.206       Low
cufflinks 35.56     High High
cufflinks 5.7        
cufflinks 18.173        
cufflinks 3.28       Low
cufflinks 19.404        

0 Strain