Gene : EXPA16 A. thaliana TAIR10
Primary Identifier:  ? AT3G55500 Defline:  (1 of 3) PTHR31867//PTHR31867:SF5 - FAMILY NOT NAMED // EXPANSIN-A16-RELATED
Genomic Order:  4594 Name:  ? AT3G55500
Secondary Identifier:  ? PAC:19662709
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Expression

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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G55500 0.5kb upstream 0.5kb upstream 1852 true Chr3: 20574831-20576682 Arabidopsis thaliana
AT3G55500 0.5kb upstream 0.5kb upstream 500 false Chr3: 20576183-20576682 Arabidopsis thaliana
AT3G55500 0.5kb downstream 0.5kb downstream 1852 true Chr3: 20574331-20576182 Arabidopsis thaliana
AT3G55500 0.5kb downstream 0.5kb downstream 500 false Chr3: 20574331-20574830 Arabidopsis thaliana
AT3G55500 1.0kb upstream 1.0kb upstream 2352 true Chr3: 20574831-20577182 Arabidopsis thaliana
AT3G55500 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20576183-20577182 Arabidopsis thaliana
AT3G55500 1.0kb downstream 1.0kb downstream 2352 true Chr3: 20573831-20576182 Arabidopsis thaliana
AT3G55500 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20573831-20574830 Arabidopsis thaliana
AT3G55500 2.0kb upstream 2.0kb upstream 3352 true Chr3: 20574831-20578182 Arabidopsis thaliana
AT3G55500 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20576183-20578182 Arabidopsis thaliana
AT3G55500 2.0kb downstream 2.0kb downstream 3352 true Chr3: 20572831-20576182 Arabidopsis thaliana
AT3G55500 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20572831-20574830 Arabidopsis thaliana
AT3G55500 5.0kb upstream 5.0kb upstream 6352 true Chr3: 20574831-20581182 Arabidopsis thaliana
AT3G55500 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20576183-20581182 Arabidopsis thaliana
AT3G55500 5.0kb downstream 5.0kb downstream 6352 true Chr3: 20569831-20576182 Arabidopsis thaliana
AT3G55500 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20569831-20574830 Arabidopsis thaliana
AT3G55500 10.0kb upstream 10.0kb upstream 11352 true Chr3: 20574831-20586182 Arabidopsis thaliana
AT3G55500 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20576183-20586182 Arabidopsis thaliana
AT3G55500 10.0kb downstream 10.0kb downstream 11352 true Chr3: 20564831-20576182 Arabidopsis thaliana
AT3G55500 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20564831-20574830 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375031 5261 Brassicaceae View MSA
123800866 5264 Brassicales-Malvales View MSA
124298229 5266 SBM View MSA
124149924 5268 Malvidae View MSA
123875637 5270 Rosid View MSA
123459428 5271 Pentapetalae View MSA
122494819 5272 Eudicot View MSA
122047888 5273 Angiosperm View MSA
123429074 5275 Viridiplantae View MSA
121351680 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.395       High
cufflinks 0.113     Low  
cufflinks 6.378        
cufflinks 0.069     Low Low
cufflinks 6.814        
cufflinks 0.199     Low  

0 Strain