Gene : AT3G54450 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11654:SF133 - PROTEIN NRT1/ PTR FAMILY 5.4 Genomic Order:  4483
Name:  ? AT3G54450 Secondary Identifier:  ? PAC:19659726
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54450 0.5kb upstream 0.5kb upstream 3972 true Chr3: 20158034-20162005 Arabidopsis thaliana
AT3G54450 0.5kb upstream 0.5kb upstream 500 false Chr3: 20158034-20158533 Arabidopsis thaliana
AT3G54450 0.5kb downstream 0.5kb downstream 3972 true Chr3: 20158534-20162505 Arabidopsis thaliana
AT3G54450 0.5kb downstream 0.5kb downstream 500 false Chr3: 20162006-20162505 Arabidopsis thaliana
AT3G54450 1.0kb upstream 1.0kb upstream 4472 true Chr3: 20157534-20162005 Arabidopsis thaliana
AT3G54450 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20157534-20158533 Arabidopsis thaliana
AT3G54450 1.0kb downstream 1.0kb downstream 4472 true Chr3: 20158534-20163005 Arabidopsis thaliana
AT3G54450 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20162006-20163005 Arabidopsis thaliana
AT3G54450 2.0kb upstream 2.0kb upstream 5472 true Chr3: 20156534-20162005 Arabidopsis thaliana
AT3G54450 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20156534-20158533 Arabidopsis thaliana
AT3G54450 2.0kb downstream 2.0kb downstream 5472 true Chr3: 20158534-20164005 Arabidopsis thaliana
AT3G54450 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20162006-20164005 Arabidopsis thaliana
AT3G54450 5.0kb upstream 5.0kb upstream 8472 true Chr3: 20153534-20162005 Arabidopsis thaliana
AT3G54450 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20153534-20158533 Arabidopsis thaliana
AT3G54450 5.0kb downstream 5.0kb downstream 8472 true Chr3: 20158534-20167005 Arabidopsis thaliana
AT3G54450 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20162006-20167005 Arabidopsis thaliana
AT3G54450 10.0kb upstream 10.0kb upstream 13472 true Chr3: 20148534-20162005 Arabidopsis thaliana
AT3G54450 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20148534-20158533 Arabidopsis thaliana
AT3G54450 10.0kb downstream 10.0kb downstream 13472 true Chr3: 20158534-20172005 Arabidopsis thaliana
AT3G54450 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20162006-20172005 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368765 5261 Brassicaceae View MSA
123834357 5264 Brassicales-Malvales View MSA
124345677 5266 SBM View MSA
124250409 5268 Malvidae View MSA
124072742 5270 Rosid View MSA
123752034 5271 Pentapetalae View MSA
122791264 5272 Eudicot View MSA
122045337 5273 Angiosperm View MSA
121350655 5274 Embryophyte View MSA
123428779 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.327     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.65        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.99        

0 Strain