Gene : AT3G53950 A. thaliana TAIR10
Defline:  (1 of 7) 1.1.3.9 - Galactose oxidase / Beta-galactose oxidase Genomic Order:  4433
Name:  ? AT3G53950 Secondary Identifier:  ? PAC:19662741
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53950 0.5kb upstream 0.5kb upstream 2321 true Chr3: 19975119-19977439 Arabidopsis thaliana
AT3G53950 0.5kb upstream 0.5kb upstream 500 false Chr3: 19975119-19975618 Arabidopsis thaliana
AT3G53950 0.5kb downstream 0.5kb downstream 2321 true Chr3: 19975619-19977939 Arabidopsis thaliana
AT3G53950 0.5kb downstream 0.5kb downstream 500 false Chr3: 19977440-19977939 Arabidopsis thaliana
AT3G53950 1.0kb upstream 1.0kb upstream 2821 true Chr3: 19974619-19977439 Arabidopsis thaliana
AT3G53950 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19974619-19975618 Arabidopsis thaliana
AT3G53950 1.0kb downstream 1.0kb downstream 2821 true Chr3: 19975619-19978439 Arabidopsis thaliana
AT3G53950 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19977440-19978439 Arabidopsis thaliana
AT3G53950 2.0kb upstream 2.0kb upstream 3821 true Chr3: 19973619-19977439 Arabidopsis thaliana
AT3G53950 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19973619-19975618 Arabidopsis thaliana
AT3G53950 2.0kb downstream 2.0kb downstream 3821 true Chr3: 19975619-19979439 Arabidopsis thaliana
AT3G53950 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19977440-19979439 Arabidopsis thaliana
AT3G53950 5.0kb upstream 5.0kb upstream 6821 true Chr3: 19970619-19977439 Arabidopsis thaliana
AT3G53950 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19970619-19975618 Arabidopsis thaliana
AT3G53950 5.0kb downstream 5.0kb downstream 6821 true Chr3: 19975619-19982439 Arabidopsis thaliana
AT3G53950 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19977440-19982439 Arabidopsis thaliana
AT3G53950 10.0kb upstream 10.0kb upstream 11821 true Chr3: 19965619-19977439 Arabidopsis thaliana
AT3G53950 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19965619-19975618 Arabidopsis thaliana
AT3G53950 10.0kb downstream 10.0kb downstream 11821 true Chr3: 19975619-19987439 Arabidopsis thaliana
AT3G53950 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19977440-19987439 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368557 5261 Brassicaceae View MSA
123836543 5264 Brassicales-Malvales View MSA
124345936 5266 SBM View MSA
124240231 5268 Malvidae View MSA
124065622 5270 Rosid View MSA
123740905 5271 Pentapetalae View MSA
122792827 5272 Eudicot View MSA
122041701 5273 Angiosperm View MSA
123428969 5275 Viridiplantae View MSA
121350971 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.392        
cufflinks 13.029       High
cufflinks 8.107        
cufflinks 11.577        
cufflinks 6.875       Low
cufflinks 10.89        

0 Strain