Gene : AT3G53850 A. thaliana TAIR10
Defline:  (1 of 39) PF04535 - Domain of unknown function (DUF588) (DUF588) Genomic Order:  4423
Name:  ? AT3G53850 Secondary Identifier:  ? PAC:19664114
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53850 0.5kb upstream 0.5kb upstream 1658 true Chr3: 19948131-19949788 Arabidopsis thaliana
AT3G53850 0.5kb upstream 0.5kb upstream 500 false Chr3: 19949289-19949788 Arabidopsis thaliana
AT3G53850 0.5kb downstream 0.5kb downstream 1658 true Chr3: 19947631-19949288 Arabidopsis thaliana
AT3G53850 0.5kb downstream 0.5kb downstream 500 false Chr3: 19947631-19948130 Arabidopsis thaliana
AT3G53850 1.0kb upstream 1.0kb upstream 2158 true Chr3: 19948131-19950288 Arabidopsis thaliana
AT3G53850 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19949289-19950288 Arabidopsis thaliana
AT3G53850 1.0kb downstream 1.0kb downstream 2158 true Chr3: 19947131-19949288 Arabidopsis thaliana
AT3G53850 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19947131-19948130 Arabidopsis thaliana
AT3G53850 2.0kb upstream 2.0kb upstream 3158 true Chr3: 19948131-19951288 Arabidopsis thaliana
AT3G53850 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19949289-19951288 Arabidopsis thaliana
AT3G53850 2.0kb downstream 2.0kb downstream 3158 true Chr3: 19946131-19949288 Arabidopsis thaliana
AT3G53850 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19946131-19948130 Arabidopsis thaliana
AT3G53850 5.0kb upstream 5.0kb upstream 6158 true Chr3: 19948131-19954288 Arabidopsis thaliana
AT3G53850 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19949289-19954288 Arabidopsis thaliana
AT3G53850 5.0kb downstream 5.0kb downstream 6158 true Chr3: 19943131-19949288 Arabidopsis thaliana
AT3G53850 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19943131-19948130 Arabidopsis thaliana
AT3G53850 10.0kb upstream 10.0kb upstream 11158 true Chr3: 19948131-19959288 Arabidopsis thaliana
AT3G53850 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19949289-19959288 Arabidopsis thaliana
AT3G53850 10.0kb downstream 10.0kb downstream 11158 true Chr3: 19938131-19949288 Arabidopsis thaliana
AT3G53850 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19938131-19948130 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378528 5261 Brassicaceae View MSA
123839256 5264 Brassicales-Malvales View MSA
124343418 5266 SBM View MSA
124248558 5268 Malvidae View MSA
124063057 5270 Rosid View MSA
123740553 5271 Pentapetalae View MSA
122796755 5272 Eudicot View MSA
122043867 5273 Angiosperm View MSA
121310202 5274 Embryophyte View MSA
123347759 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.498        
cufflinks 9.888        
cufflinks 10.93       High
cufflinks 9.219        
cufflinks 8.522       Low
cufflinks 9.408        

0 Strain