Gene : AT3G54120 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10994:SF65 - RETICULON-LIKE PROTEIN B12 Genomic Order:  4451
Name:  ? AT3G54120 Secondary Identifier:  ? PAC:19661971
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54120 0.5kb upstream 0.5kb upstream 1715 true Chr3: 20041126-20042840 Arabidopsis thaliana
AT3G54120 0.5kb upstream 0.5kb upstream 500 false Chr3: 20042341-20042840 Arabidopsis thaliana
AT3G54120 0.5kb downstream 0.5kb downstream 1715 true Chr3: 20040626-20042340 Arabidopsis thaliana
AT3G54120 0.5kb downstream 0.5kb downstream 500 false Chr3: 20040626-20041125 Arabidopsis thaliana
AT3G54120 1.0kb upstream 1.0kb upstream 2215 true Chr3: 20041126-20043340 Arabidopsis thaliana
AT3G54120 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20042341-20043340 Arabidopsis thaliana
AT3G54120 1.0kb downstream 1.0kb downstream 2215 true Chr3: 20040126-20042340 Arabidopsis thaliana
AT3G54120 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20040126-20041125 Arabidopsis thaliana
AT3G54120 2.0kb upstream 2.0kb upstream 3215 true Chr3: 20041126-20044340 Arabidopsis thaliana
AT3G54120 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20042341-20044340 Arabidopsis thaliana
AT3G54120 2.0kb downstream 2.0kb downstream 3215 true Chr3: 20039126-20042340 Arabidopsis thaliana
AT3G54120 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20039126-20041125 Arabidopsis thaliana
AT3G54120 5.0kb upstream 5.0kb upstream 6215 true Chr3: 20041126-20047340 Arabidopsis thaliana
AT3G54120 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20042341-20047340 Arabidopsis thaliana
AT3G54120 5.0kb downstream 5.0kb downstream 6215 true Chr3: 20036126-20042340 Arabidopsis thaliana
AT3G54120 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20036126-20041125 Arabidopsis thaliana
AT3G54120 10.0kb upstream 10.0kb upstream 11215 true Chr3: 20041126-20052340 Arabidopsis thaliana
AT3G54120 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20042341-20052340 Arabidopsis thaliana
AT3G54120 10.0kb downstream 10.0kb downstream 11215 true Chr3: 20031126-20042340 Arabidopsis thaliana
AT3G54120 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20031126-20041125 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368574 5261 Brassicaceae View MSA
123832727 5264 Brassicales-Malvales View MSA
124341072 5266 SBM View MSA
124242359 5268 Malvidae View MSA
124068934 5270 Rosid View MSA
123737758 5271 Pentapetalae View MSA
122789632 5272 Eudicot View MSA
122047418 5273 Angiosperm View MSA
123429002 5275 Viridiplantae View MSA
121351639 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.053        
cufflinks 7.599        
cufflinks 3.87        
cufflinks 7.854        
cufflinks 2.465       Low
cufflinks 7.783        

0 Strain