Gene : AT3G54250 A. thaliana TAIR10
Defline:  (1 of 2) 4.1.1.33 - Diphosphomevalonate decarboxylase / Mevalonate pyrophosphate decarboxylase Genomic Order:  4464
Name:  ? AT3G54250 Secondary Identifier:  ? PAC:19664579
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5910 Arabidopsis thaliana pathologic  
Athaliana PWY-922 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54250 0.5kb upstream 0.5kb upstream 2934 true Chr3: 20082299-20085232 Arabidopsis thaliana
AT3G54250 0.5kb upstream 0.5kb upstream 500 false Chr3: 20084733-20085232 Arabidopsis thaliana
AT3G54250 0.5kb downstream 0.5kb downstream 2934 true Chr3: 20081799-20084732 Arabidopsis thaliana
AT3G54250 0.5kb downstream 0.5kb downstream 500 false Chr3: 20081799-20082298 Arabidopsis thaliana
AT3G54250 1.0kb upstream 1.0kb upstream 3434 true Chr3: 20082299-20085732 Arabidopsis thaliana
AT3G54250 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20084733-20085732 Arabidopsis thaliana
AT3G54250 1.0kb downstream 1.0kb downstream 3434 true Chr3: 20081299-20084732 Arabidopsis thaliana
AT3G54250 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20081299-20082298 Arabidopsis thaliana
AT3G54250 2.0kb upstream 2.0kb upstream 4434 true Chr3: 20082299-20086732 Arabidopsis thaliana
AT3G54250 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20084733-20086732 Arabidopsis thaliana
AT3G54250 2.0kb downstream 2.0kb downstream 4434 true Chr3: 20080299-20084732 Arabidopsis thaliana
AT3G54250 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20080299-20082298 Arabidopsis thaliana
AT3G54250 5.0kb upstream 5.0kb upstream 7434 true Chr3: 20082299-20089732 Arabidopsis thaliana
AT3G54250 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20084733-20089732 Arabidopsis thaliana
AT3G54250 5.0kb downstream 5.0kb downstream 7434 true Chr3: 20077299-20084732 Arabidopsis thaliana
AT3G54250 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20077299-20082298 Arabidopsis thaliana
AT3G54250 10.0kb upstream 10.0kb upstream 12434 true Chr3: 20082299-20094732 Arabidopsis thaliana
AT3G54250 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20084733-20094732 Arabidopsis thaliana
AT3G54250 10.0kb downstream 10.0kb downstream 12434 true Chr3: 20072299-20084732 Arabidopsis thaliana
AT3G54250 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20072299-20082298 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040965 5273 Angiosperm View MSA
122378067 5261 Brassicaceae View MSA
123830303 5264 Brassicales-Malvales View MSA
124340099 5266 SBM View MSA
124242866 5268 Malvidae View MSA
124066077 5270 Rosid View MSA
123742848 5271 Pentapetalae View MSA
122793764 5272 Eudicot View MSA
121347307 5274 Embryophyte View MSA
123380524 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.566        
cufflinks 9.704        
cufflinks 3.695        
cufflinks 10.986       High
cufflinks 3.616        
cufflinks 10.099        

0 Strain