Gene : AT3G54270 A. thaliana TAIR10
Defline:  (1 of 4) 3.1.3.24 - Sucrose-phosphate phosphatase / Sucrose-6-phosphate phosphatase Genomic Order:  4466
Name:  ? AT3G54270 Secondary Identifier:  ? PAC:19661234
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7238 Arabidopsis thaliana pathologic  
Athaliana SUCSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54270 0.5kb upstream 0.5kb upstream 3265 true Chr3: 20087082-20090346 Arabidopsis thaliana
AT3G54270 0.5kb upstream 0.5kb upstream 500 false Chr3: 20089847-20090346 Arabidopsis thaliana
AT3G54270 0.5kb downstream 0.5kb downstream 3265 true Chr3: 20086582-20089846 Arabidopsis thaliana
AT3G54270 0.5kb downstream 0.5kb downstream 500 false Chr3: 20086582-20087081 Arabidopsis thaliana
AT3G54270 1.0kb upstream 1.0kb upstream 3765 true Chr3: 20087082-20090846 Arabidopsis thaliana
AT3G54270 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20089847-20090846 Arabidopsis thaliana
AT3G54270 1.0kb downstream 1.0kb downstream 3765 true Chr3: 20086082-20089846 Arabidopsis thaliana
AT3G54270 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20086082-20087081 Arabidopsis thaliana
AT3G54270 2.0kb upstream 2.0kb upstream 4765 true Chr3: 20087082-20091846 Arabidopsis thaliana
AT3G54270 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20089847-20091846 Arabidopsis thaliana
AT3G54270 2.0kb downstream 2.0kb downstream 4765 true Chr3: 20085082-20089846 Arabidopsis thaliana
AT3G54270 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20085082-20087081 Arabidopsis thaliana
AT3G54270 5.0kb upstream 5.0kb upstream 7765 true Chr3: 20087082-20094846 Arabidopsis thaliana
AT3G54270 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20089847-20094846 Arabidopsis thaliana
AT3G54270 5.0kb downstream 5.0kb downstream 7765 true Chr3: 20082082-20089846 Arabidopsis thaliana
AT3G54270 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20082082-20087081 Arabidopsis thaliana
AT3G54270 10.0kb upstream 10.0kb upstream 12765 true Chr3: 20087082-20099846 Arabidopsis thaliana
AT3G54270 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20089847-20099846 Arabidopsis thaliana
AT3G54270 10.0kb downstream 10.0kb downstream 12765 true Chr3: 20077082-20089846 Arabidopsis thaliana
AT3G54270 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20077082-20087081 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121511775 5273 Angiosperm View MSA
122378731 5261 Brassicaceae View MSA
123801974 5264 Brassicales-Malvales View MSA
124299210 5266 SBM View MSA
124150686 5268 Malvidae View MSA
123876259 5270 Rosid View MSA
123459957 5271 Pentapetalae View MSA
122495338 5272 Eudicot View MSA
120784806 5274 Embryophyte View MSA
122826698 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.991        
cufflinks 2.212        
cufflinks 0.476       Low
cufflinks 2.58       High
cufflinks 0.681        
cufflinks 2.058        

0 Strain