Gene : AT3G53040 A. thaliana TAIR10
Defline:  (1 of 2) PTHR23241:SF11 - LATE EMBRYOGENESIS ABUNDANT PROTEIN (ATECP63)-RELATED Genomic Order:  4333
Name:  ? AT3G53040 Secondary Identifier:  ? PAC:19662417
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53040 0.5kb upstream 0.5kb upstream 2314 true Chr3: 19664674-19666987 Arabidopsis thaliana
AT3G53040 0.5kb upstream 0.5kb upstream 500 false Chr3: 19666488-19666987 Arabidopsis thaliana
AT3G53040 0.5kb downstream 0.5kb downstream 2314 true Chr3: 19664174-19666487 Arabidopsis thaliana
AT3G53040 0.5kb downstream 0.5kb downstream 500 false Chr3: 19664174-19664673 Arabidopsis thaliana
AT3G53040 1.0kb upstream 1.0kb upstream 2814 true Chr3: 19664674-19667487 Arabidopsis thaliana
AT3G53040 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19666488-19667487 Arabidopsis thaliana
AT3G53040 1.0kb downstream 1.0kb downstream 2814 true Chr3: 19663674-19666487 Arabidopsis thaliana
AT3G53040 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19663674-19664673 Arabidopsis thaliana
AT3G53040 2.0kb upstream 2.0kb upstream 3814 true Chr3: 19664674-19668487 Arabidopsis thaliana
AT3G53040 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19666488-19668487 Arabidopsis thaliana
AT3G53040 2.0kb downstream 2.0kb downstream 3814 true Chr3: 19662674-19666487 Arabidopsis thaliana
AT3G53040 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19662674-19664673 Arabidopsis thaliana
AT3G53040 5.0kb upstream 5.0kb upstream 6814 true Chr3: 19664674-19671487 Arabidopsis thaliana
AT3G53040 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19666488-19671487 Arabidopsis thaliana
AT3G53040 5.0kb downstream 5.0kb downstream 6814 true Chr3: 19659674-19666487 Arabidopsis thaliana
AT3G53040 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19659674-19664673 Arabidopsis thaliana
AT3G53040 10.0kb upstream 10.0kb upstream 11814 true Chr3: 19664674-19676487 Arabidopsis thaliana
AT3G53040 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19666488-19676487 Arabidopsis thaliana
AT3G53040 10.0kb downstream 10.0kb downstream 11814 true Chr3: 19654674-19666487 Arabidopsis thaliana
AT3G53040 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19654674-19664673 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365186 5261 Brassicaceae View MSA
123838811 5264 Brassicales-Malvales View MSA
124341968 5266 SBM View MSA
124253564 5268 Malvidae View MSA
124071734 5270 Rosid View MSA
123743630 5271 Pentapetalae View MSA
122796443 5272 Eudicot View MSA
122050999 5273 Angiosperm View MSA
121350297 5274 Embryophyte View MSA
123428296 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.079     Low  
cufflinks 0.325     Low  
cufflinks 0.024     Low Low
cufflinks 1.775       High
cufflinks 0.095     Low  
cufflinks 0.68        

0 Strain