Gene : AT3G52760 A. thaliana TAIR10
Defline:  (1 of 2) PTHR21236//PTHR21236:SF8 - GOLGI MEMBRANE PROTEIN YIP1 // INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN Genomic Order:  4303
Name:  ? AT3G52760 Secondary Identifier:  ? PAC:19658631
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G52760 0.5kb upstream 0.5kb upstream 1634 true Chr3: 19553679-19555312 Arabidopsis thaliana
AT3G52760 0.5kb upstream 0.5kb upstream 500 false Chr3: 19554813-19555312 Arabidopsis thaliana
AT3G52760 0.5kb downstream 0.5kb downstream 1634 true Chr3: 19553179-19554812 Arabidopsis thaliana
AT3G52760 0.5kb downstream 0.5kb downstream 500 false Chr3: 19553179-19553678 Arabidopsis thaliana
AT3G52760 1.0kb upstream 1.0kb upstream 2134 true Chr3: 19553679-19555812 Arabidopsis thaliana
AT3G52760 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19554813-19555812 Arabidopsis thaliana
AT3G52760 1.0kb downstream 1.0kb downstream 2134 true Chr3: 19552679-19554812 Arabidopsis thaliana
AT3G52760 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19552679-19553678 Arabidopsis thaliana
AT3G52760 2.0kb upstream 2.0kb upstream 3134 true Chr3: 19553679-19556812 Arabidopsis thaliana
AT3G52760 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19554813-19556812 Arabidopsis thaliana
AT3G52760 2.0kb downstream 2.0kb downstream 3134 true Chr3: 19551679-19554812 Arabidopsis thaliana
AT3G52760 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19551679-19553678 Arabidopsis thaliana
AT3G52760 5.0kb upstream 5.0kb upstream 6134 true Chr3: 19553679-19559812 Arabidopsis thaliana
AT3G52760 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19554813-19559812 Arabidopsis thaliana
AT3G52760 5.0kb downstream 5.0kb downstream 6134 true Chr3: 19548679-19554812 Arabidopsis thaliana
AT3G52760 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19548679-19553678 Arabidopsis thaliana
AT3G52760 10.0kb upstream 10.0kb upstream 11134 true Chr3: 19553679-19564812 Arabidopsis thaliana
AT3G52760 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19554813-19564812 Arabidopsis thaliana
AT3G52760 10.0kb downstream 10.0kb downstream 11134 true Chr3: 19543679-19554812 Arabidopsis thaliana
AT3G52760 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19543679-19553678 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343987 5261 Brassicaceae View MSA
123841173 5264 Brassicales-Malvales View MSA
124339773 5266 SBM View MSA
124237053 5268 Malvidae View MSA
124071783 5270 Rosid View MSA
123751482 5271 Pentapetalae View MSA
122787116 5272 Eudicot View MSA
122046635 5273 Angiosperm View MSA
121346620 5274 Embryophyte View MSA
123427417 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.668        
cufflinks 11.423        
cufflinks 9.243       Low
cufflinks 11.411        
cufflinks 10.05        
cufflinks 13.187       High

0 Strain