Gene : AT3G51660 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11954:SF25 - LS1-LIKE PROTEIN Genomic Order:  4188
Name:  ? AT3G51660 Secondary Identifier:  ? PAC:19659570
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6498 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G51660 0.5kb upstream 0.5kb upstream 1685 true Chr3: 19164063-19165747 Arabidopsis thaliana
AT3G51660 0.5kb upstream 0.5kb upstream 500 false Chr3: 19165248-19165747 Arabidopsis thaliana
AT3G51660 0.5kb downstream 0.5kb downstream 1685 true Chr3: 19163563-19165247 Arabidopsis thaliana
AT3G51660 0.5kb downstream 0.5kb downstream 500 false Chr3: 19163563-19164062 Arabidopsis thaliana
AT3G51660 1.0kb upstream 1.0kb upstream 2185 true Chr3: 19164063-19166247 Arabidopsis thaliana
AT3G51660 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19165248-19166247 Arabidopsis thaliana
AT3G51660 1.0kb downstream 1.0kb downstream 2185 true Chr3: 19163063-19165247 Arabidopsis thaliana
AT3G51660 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19163063-19164062 Arabidopsis thaliana
AT3G51660 2.0kb upstream 2.0kb upstream 3185 true Chr3: 19164063-19167247 Arabidopsis thaliana
AT3G51660 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19165248-19167247 Arabidopsis thaliana
AT3G51660 2.0kb downstream 2.0kb downstream 3185 true Chr3: 19162063-19165247 Arabidopsis thaliana
AT3G51660 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19162063-19164062 Arabidopsis thaliana
AT3G51660 5.0kb upstream 5.0kb upstream 6185 true Chr3: 19164063-19170247 Arabidopsis thaliana
AT3G51660 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19165248-19170247 Arabidopsis thaliana
AT3G51660 5.0kb downstream 5.0kb downstream 6185 true Chr3: 19159063-19165247 Arabidopsis thaliana
AT3G51660 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19159063-19164062 Arabidopsis thaliana
AT3G51660 10.0kb upstream 10.0kb upstream 11185 true Chr3: 19164063-19175247 Arabidopsis thaliana
AT3G51660 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19165248-19175247 Arabidopsis thaliana
AT3G51660 10.0kb downstream 10.0kb downstream 11185 true Chr3: 19154063-19165247 Arabidopsis thaliana
AT3G51660 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19154063-19164062 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026284 5273 Angiosperm View MSA
122378131 5261 Brassicaceae View MSA
123836662 5264 Brassicales-Malvales View MSA
124346688 5266 SBM View MSA
124250805 5268 Malvidae View MSA
124069445 5270 Rosid View MSA
123741534 5271 Pentapetalae View MSA
122794012 5272 Eudicot View MSA
121349175 5274 Embryophyte View MSA
123424544 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.499       High
cufflinks 1.415       Low
cufflinks 11.377        
cufflinks 1.849        
cufflinks 20.038       High
cufflinks 1.757        

0 Strain