Gene : CAX3 A. thaliana TAIR10
Primary Identifier:  ? AT3G51860 Defline:  (1 of 5) K07300 - Ca2+:H+ antiporter (chaA, CAX)
Genomic Order:  4208 Name:  ? AT3G51860
Secondary Identifier:  ? PAC:19659466
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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G51860 0.5kb upstream 0.5kb upstream 3987 true Chr3: 19238927-19242913 Arabidopsis thaliana
AT3G51860 0.5kb upstream 0.5kb upstream 500 false Chr3: 19238927-19239426 Arabidopsis thaliana
AT3G51860 0.5kb downstream 0.5kb downstream 3987 true Chr3: 19239427-19243413 Arabidopsis thaliana
AT3G51860 0.5kb downstream 0.5kb downstream 500 false Chr3: 19242914-19243413 Arabidopsis thaliana
AT3G51860 1.0kb upstream 1.0kb upstream 4487 true Chr3: 19238427-19242913 Arabidopsis thaliana
AT3G51860 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19238427-19239426 Arabidopsis thaliana
AT3G51860 1.0kb downstream 1.0kb downstream 4487 true Chr3: 19239427-19243913 Arabidopsis thaliana
AT3G51860 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19242914-19243913 Arabidopsis thaliana
AT3G51860 2.0kb upstream 2.0kb upstream 5487 true Chr3: 19237427-19242913 Arabidopsis thaliana
AT3G51860 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19237427-19239426 Arabidopsis thaliana
AT3G51860 2.0kb downstream 2.0kb downstream 5487 true Chr3: 19239427-19244913 Arabidopsis thaliana
AT3G51860 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19242914-19244913 Arabidopsis thaliana
AT3G51860 5.0kb upstream 5.0kb upstream 8487 true Chr3: 19234427-19242913 Arabidopsis thaliana
AT3G51860 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19234427-19239426 Arabidopsis thaliana
AT3G51860 5.0kb downstream 5.0kb downstream 8487 true Chr3: 19239427-19247913 Arabidopsis thaliana
AT3G51860 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19242914-19247913 Arabidopsis thaliana
AT3G51860 10.0kb upstream 10.0kb upstream 13487 true Chr3: 19229427-19242913 Arabidopsis thaliana
AT3G51860 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19229427-19239426 Arabidopsis thaliana
AT3G51860 10.0kb downstream 10.0kb downstream 13487 true Chr3: 19239427-19252913 Arabidopsis thaliana
AT3G51860 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19242914-19252913 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360338 5261 Brassicaceae View MSA
123838575 5264 Brassicales-Malvales View MSA
124344676 5266 SBM View MSA
124242914 5268 Malvidae View MSA
124065189 5270 Rosid View MSA
123739014 5271 Pentapetalae View MSA
122792056 5272 Eudicot View MSA
122048075 5273 Angiosperm View MSA
121310844 5274 Embryophyte View MSA
123427763 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.471       High
cufflinks 6.548        
cufflinks 6.993        
cufflinks 5.261       Low
cufflinks 12.833        
cufflinks 7.96        

0 Strain