Gene : AT3G51440 A. thaliana TAIR10
Defline:  (1 of 4) PTHR10426//PTHR10426:SF4 - STRICTOSIDINE SYNTHASE-RELATED // FI18644P1-RELATED Genomic Order:  4162
Name:  ? AT3G51440 Secondary Identifier:  ? PAC:19662764
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G51440 0.5kb upstream 0.5kb upstream 2059 true Chr3: 19088581-19090639 Arabidopsis thaliana
AT3G51440 0.5kb upstream 0.5kb upstream 500 false Chr3: 19088581-19089080 Arabidopsis thaliana
AT3G51440 0.5kb downstream 0.5kb downstream 2059 true Chr3: 19089081-19091139 Arabidopsis thaliana
AT3G51440 0.5kb downstream 0.5kb downstream 500 false Chr3: 19090640-19091139 Arabidopsis thaliana
AT3G51440 1.0kb upstream 1.0kb upstream 2559 true Chr3: 19088081-19090639 Arabidopsis thaliana
AT3G51440 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19088081-19089080 Arabidopsis thaliana
AT3G51440 1.0kb downstream 1.0kb downstream 2559 true Chr3: 19089081-19091639 Arabidopsis thaliana
AT3G51440 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19090640-19091639 Arabidopsis thaliana
AT3G51440 2.0kb upstream 2.0kb upstream 3559 true Chr3: 19087081-19090639 Arabidopsis thaliana
AT3G51440 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19087081-19089080 Arabidopsis thaliana
AT3G51440 2.0kb downstream 2.0kb downstream 3559 true Chr3: 19089081-19092639 Arabidopsis thaliana
AT3G51440 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19090640-19092639 Arabidopsis thaliana
AT3G51440 5.0kb upstream 5.0kb upstream 6559 true Chr3: 19084081-19090639 Arabidopsis thaliana
AT3G51440 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19084081-19089080 Arabidopsis thaliana
AT3G51440 5.0kb downstream 5.0kb downstream 6559 true Chr3: 19089081-19095639 Arabidopsis thaliana
AT3G51440 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19090640-19095639 Arabidopsis thaliana
AT3G51440 10.0kb upstream 10.0kb upstream 11559 true Chr3: 19079081-19090639 Arabidopsis thaliana
AT3G51440 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19079081-19089080 Arabidopsis thaliana
AT3G51440 10.0kb downstream 10.0kb downstream 11559 true Chr3: 19089081-19100639 Arabidopsis thaliana
AT3G51440 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19090640-19100639 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372909 5261 Brassicaceae View MSA
123840194 5264 Brassicales-Malvales View MSA
124339296 5266 SBM View MSA
124239210 5268 Malvidae View MSA
124063956 5270 Rosid View MSA
123752998 5271 Pentapetalae View MSA
122789365 5272 Eudicot View MSA
122048582 5273 Angiosperm View MSA
121348061 5274 Embryophyte View MSA
123427583 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.025       High
cufflinks 3.724        
cufflinks 2.499       Low
cufflinks 5.904        
cufflinks 5.11        
cufflinks 5.112        

0 Strain