Gene : AT1G30190 A. thaliana TAIR10
Defline:  (1 of 28) PF05553 - Cotton fibre expressed protein (DUF761) Genomic Order:  2986
Name:  ? AT1G30190 Secondary Identifier:  ? PAC:19651854
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G30190 0.5kb upstream 0.5kb upstream 1337 true Chr1: 10618466-10619802 Arabidopsis thaliana
AT1G30190 0.5kb upstream 0.5kb upstream 500 false Chr1: 10618466-10618965 Arabidopsis thaliana
AT1G30190 0.5kb downstream 0.5kb downstream 1337 true Chr1: 10618966-10620302 Arabidopsis thaliana
AT1G30190 0.5kb downstream 0.5kb downstream 500 false Chr1: 10619803-10620302 Arabidopsis thaliana
AT1G30190 1.0kb upstream 1.0kb upstream 1837 true Chr1: 10617966-10619802 Arabidopsis thaliana
AT1G30190 1.0kb upstream 1.0kb upstream 1000 false Chr1: 10617966-10618965 Arabidopsis thaliana
AT1G30190 1.0kb downstream 1.0kb downstream 1837 true Chr1: 10618966-10620802 Arabidopsis thaliana
AT1G30190 1.0kb downstream 1.0kb downstream 1000 false Chr1: 10619803-10620802 Arabidopsis thaliana
AT1G30190 2.0kb upstream 2.0kb upstream 2837 true Chr1: 10616966-10619802 Arabidopsis thaliana
AT1G30190 2.0kb upstream 2.0kb upstream 2000 false Chr1: 10616966-10618965 Arabidopsis thaliana
AT1G30190 2.0kb downstream 2.0kb downstream 2837 true Chr1: 10618966-10621802 Arabidopsis thaliana
AT1G30190 2.0kb downstream 2.0kb downstream 2000 false Chr1: 10619803-10621802 Arabidopsis thaliana
AT1G30190 5.0kb upstream 5.0kb upstream 5837 true Chr1: 10613966-10619802 Arabidopsis thaliana
AT1G30190 5.0kb upstream 5.0kb upstream 5000 false Chr1: 10613966-10618965 Arabidopsis thaliana
AT1G30190 5.0kb downstream 5.0kb downstream 5837 true Chr1: 10618966-10624802 Arabidopsis thaliana
AT1G30190 5.0kb downstream 5.0kb downstream 5000 false Chr1: 10619803-10624802 Arabidopsis thaliana
AT1G30190 10.0kb upstream 10.0kb upstream 10837 true Chr1: 10608966-10619802 Arabidopsis thaliana
AT1G30190 10.0kb upstream 10.0kb upstream 10000 false Chr1: 10608966-10618965 Arabidopsis thaliana
AT1G30190 10.0kb downstream 10.0kb downstream 10837 true Chr1: 10618966-10629802 Arabidopsis thaliana
AT1G30190 10.0kb downstream 10.0kb downstream 10000 false Chr1: 10619803-10629802 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027233 5273 Angiosperm View MSA
122375272 5261 Brassicaceae View MSA
123836678 5264 Brassicales-Malvales View MSA
124350105 5266 SBM View MSA
124253667 5268 Malvidae View MSA
124064960 5270 Rosid View MSA
123738835 5271 Pentapetalae View MSA
122769934 5272 Eudicot View MSA
121296919 5274 Embryophyte View MSA
123335025 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.142        
cufflinks 2.499        
cufflinks 0.276       Low
cufflinks 2.879        
cufflinks 0.343       Low
cufflinks 3.655       High

0 Strain