Gene : AT1G12650 A. thaliana TAIR10
Defline:  (1 of 1) PTHR21738:SF0 - RIBOSOMAL RNA PROCESSING PROTEIN 36 HOMOLOG Genomic Order:  1251
Name:  ? AT1G12650 Secondary Identifier:  ? PAC:19656984
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G12650 0.5kb upstream 0.5kb upstream 2573 true Chr1: 4305433-4308005 Arabidopsis thaliana
AT1G12650 0.5kb upstream 0.5kb upstream 500 false Chr1: 4305433-4305932 Arabidopsis thaliana
AT1G12650 0.5kb downstream 0.5kb downstream 2573 true Chr1: 4305933-4308505 Arabidopsis thaliana
AT1G12650 0.5kb downstream 0.5kb downstream 500 false Chr1: 4308006-4308505 Arabidopsis thaliana
AT1G12650 1.0kb upstream 1.0kb upstream 3073 true Chr1: 4304933-4308005 Arabidopsis thaliana
AT1G12650 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4304933-4305932 Arabidopsis thaliana
AT1G12650 1.0kb downstream 1.0kb downstream 3073 true Chr1: 4305933-4309005 Arabidopsis thaliana
AT1G12650 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4308006-4309005 Arabidopsis thaliana
AT1G12650 2.0kb upstream 2.0kb upstream 4073 true Chr1: 4303933-4308005 Arabidopsis thaliana
AT1G12650 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4303933-4305932 Arabidopsis thaliana
AT1G12650 2.0kb downstream 2.0kb downstream 4073 true Chr1: 4305933-4310005 Arabidopsis thaliana
AT1G12650 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4308006-4310005 Arabidopsis thaliana
AT1G12650 5.0kb upstream 5.0kb upstream 7073 true Chr1: 4300933-4308005 Arabidopsis thaliana
AT1G12650 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4300933-4305932 Arabidopsis thaliana
AT1G12650 5.0kb downstream 5.0kb downstream 7073 true Chr1: 4305933-4313005 Arabidopsis thaliana
AT1G12650 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4308006-4313005 Arabidopsis thaliana
AT1G12650 10.0kb upstream 10.0kb upstream 12073 true Chr1: 4295933-4308005 Arabidopsis thaliana
AT1G12650 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4295933-4305932 Arabidopsis thaliana
AT1G12650 10.0kb downstream 10.0kb downstream 12073 true Chr1: 4305933-4318005 Arabidopsis thaliana
AT1G12650 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4308006-4318005 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377617 5261 Brassicaceae View MSA
123833149 5264 Brassicales-Malvales View MSA
124338544 5266 SBM View MSA
124244037 5268 Malvidae View MSA
124065033 5270 Rosid View MSA
123748708 5271 Pentapetalae View MSA
122790262 5272 Eudicot View MSA
122043218 5273 Angiosperm View MSA
121347730 5274 Embryophyte View MSA
123428667 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.75        
cufflinks 4.227        
cufflinks 2.273        
cufflinks 4.064        
cufflinks 1.881       Low
cufflinks 4.254        

0 Strain