Gene : AT1G12540 A. thaliana TAIR10
Defline:  (1 of 6) PTHR13935//PTHR13935:SF54 - ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED // TRANSCRIPTION FACTOR BHLH118-RELATED Genomic Order:  1241
Name:  ? AT1G12540 Secondary Identifier:  ? PAC:19653974
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G12540 0.5kb upstream 0.5kb upstream 1747 true Chr1: 4272460-4274206 Arabidopsis thaliana
AT1G12540 0.5kb upstream 0.5kb upstream 500 false Chr1: 4272460-4272959 Arabidopsis thaliana
AT1G12540 0.5kb downstream 0.5kb downstream 1747 true Chr1: 4272960-4274706 Arabidopsis thaliana
AT1G12540 0.5kb downstream 0.5kb downstream 500 false Chr1: 4274207-4274706 Arabidopsis thaliana
AT1G12540 1.0kb upstream 1.0kb upstream 2247 true Chr1: 4271960-4274206 Arabidopsis thaliana
AT1G12540 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4271960-4272959 Arabidopsis thaliana
AT1G12540 1.0kb downstream 1.0kb downstream 2247 true Chr1: 4272960-4275206 Arabidopsis thaliana
AT1G12540 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4274207-4275206 Arabidopsis thaliana
AT1G12540 2.0kb upstream 2.0kb upstream 3247 true Chr1: 4270960-4274206 Arabidopsis thaliana
AT1G12540 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4270960-4272959 Arabidopsis thaliana
AT1G12540 2.0kb downstream 2.0kb downstream 3247 true Chr1: 4272960-4276206 Arabidopsis thaliana
AT1G12540 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4274207-4276206 Arabidopsis thaliana
AT1G12540 5.0kb upstream 5.0kb upstream 6247 true Chr1: 4267960-4274206 Arabidopsis thaliana
AT1G12540 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4267960-4272959 Arabidopsis thaliana
AT1G12540 5.0kb downstream 5.0kb downstream 6247 true Chr1: 4272960-4279206 Arabidopsis thaliana
AT1G12540 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4274207-4279206 Arabidopsis thaliana
AT1G12540 10.0kb upstream 10.0kb upstream 11247 true Chr1: 4262960-4274206 Arabidopsis thaliana
AT1G12540 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4262960-4272959 Arabidopsis thaliana
AT1G12540 10.0kb downstream 10.0kb downstream 11247 true Chr1: 4272960-4284206 Arabidopsis thaliana
AT1G12540 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4274207-4284206 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378543 5261 Brassicaceae View MSA
123837803 5264 Brassicales-Malvales View MSA
124351097 5266 SBM View MSA
124249323 5268 Malvidae View MSA
124073139 5270 Rosid View MSA
123750941 5271 Pentapetalae View MSA
122792125 5272 Eudicot View MSA
122050150 5273 Angiosperm View MSA
121311764 5274 Embryophyte View MSA
123349017 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 6.966        
cufflinks 0.029     Low  
cufflinks 11.357        
cufflinks 0.009     Low Low
cufflinks 12.497        

0 Strain