Gene : CCS A. thaliana TAIR10
Primary Identifier:  ? AT1G12520 Defline:  (1 of 1) K04569 - copper chaperone for superoxide dismutase (CCS)
Genomic Order:  1239 Name:  ? AT1G12520
Secondary Identifier:  ? PAC:19655903
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G12520 0.5kb upstream 0.5kb upstream 2321 true Chr1: 4267106-4269426 Arabidopsis thaliana
AT1G12520 0.5kb upstream 0.5kb upstream 500 false Chr1: 4268927-4269426 Arabidopsis thaliana
AT1G12520 0.5kb downstream 0.5kb downstream 2321 true Chr1: 4266606-4268926 Arabidopsis thaliana
AT1G12520 0.5kb downstream 0.5kb downstream 500 false Chr1: 4266606-4267105 Arabidopsis thaliana
AT1G12520 1.0kb upstream 1.0kb upstream 2821 true Chr1: 4267106-4269926 Arabidopsis thaliana
AT1G12520 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4268927-4269926 Arabidopsis thaliana
AT1G12520 1.0kb downstream 1.0kb downstream 2821 true Chr1: 4266106-4268926 Arabidopsis thaliana
AT1G12520 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4266106-4267105 Arabidopsis thaliana
AT1G12520 2.0kb upstream 2.0kb upstream 3821 true Chr1: 4267106-4270926 Arabidopsis thaliana
AT1G12520 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4268927-4270926 Arabidopsis thaliana
AT1G12520 2.0kb downstream 2.0kb downstream 3821 true Chr1: 4265106-4268926 Arabidopsis thaliana
AT1G12520 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4265106-4267105 Arabidopsis thaliana
AT1G12520 5.0kb upstream 5.0kb upstream 6821 true Chr1: 4267106-4273926 Arabidopsis thaliana
AT1G12520 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4268927-4273926 Arabidopsis thaliana
AT1G12520 5.0kb downstream 5.0kb downstream 6821 true Chr1: 4262106-4268926 Arabidopsis thaliana
AT1G12520 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4262106-4267105 Arabidopsis thaliana
AT1G12520 10.0kb upstream 10.0kb upstream 11821 true Chr1: 4267106-4278926 Arabidopsis thaliana
AT1G12520 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4268927-4278926 Arabidopsis thaliana
AT1G12520 10.0kb downstream 10.0kb downstream 11821 true Chr1: 4257106-4268926 Arabidopsis thaliana
AT1G12520 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4257106-4267105 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361540 5261 Brassicaceae View MSA
123832400 5264 Brassicales-Malvales View MSA
124346051 5266 SBM View MSA
124241702 5268 Malvidae View MSA
124062271 5270 Rosid View MSA
123739046 5271 Pentapetalae View MSA
122793199 5272 Eudicot View MSA
122046170 5273 Angiosperm View MSA
121346754 5274 Embryophyte View MSA
123425336 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.133       High
cufflinks 7.04       Low
cufflinks 11.625       High
cufflinks 9.605        
cufflinks 8.83        
cufflinks 8.032        

0 Strain