Gene : AT1G12340 A. thaliana TAIR10
Defline:  (1 of 4) PTHR12290:SF18 - PROTEIN CORNICHON HOMOLOG 3-RELATED Genomic Order:  1219
Name:  ? AT1G12340 Secondary Identifier:  ? PAC:19649848
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G12340 0.5kb upstream 0.5kb upstream 1415 true Chr1: 4196896-4198310 Arabidopsis thaliana
AT1G12340 0.5kb upstream 0.5kb upstream 500 false Chr1: 4196896-4197395 Arabidopsis thaliana
AT1G12340 0.5kb downstream 0.5kb downstream 1415 true Chr1: 4197396-4198810 Arabidopsis thaliana
AT1G12340 0.5kb downstream 0.5kb downstream 500 false Chr1: 4198311-4198810 Arabidopsis thaliana
AT1G12340 1.0kb upstream 1.0kb upstream 1915 true Chr1: 4196396-4198310 Arabidopsis thaliana
AT1G12340 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4196396-4197395 Arabidopsis thaliana
AT1G12340 1.0kb downstream 1.0kb downstream 1915 true Chr1: 4197396-4199310 Arabidopsis thaliana
AT1G12340 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4198311-4199310 Arabidopsis thaliana
AT1G12340 2.0kb upstream 2.0kb upstream 2915 true Chr1: 4195396-4198310 Arabidopsis thaliana
AT1G12340 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4195396-4197395 Arabidopsis thaliana
AT1G12340 2.0kb downstream 2.0kb downstream 2915 true Chr1: 4197396-4200310 Arabidopsis thaliana
AT1G12340 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4198311-4200310 Arabidopsis thaliana
AT1G12340 5.0kb upstream 5.0kb upstream 5915 true Chr1: 4192396-4198310 Arabidopsis thaliana
AT1G12340 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4192396-4197395 Arabidopsis thaliana
AT1G12340 5.0kb downstream 5.0kb downstream 5915 true Chr1: 4197396-4203310 Arabidopsis thaliana
AT1G12340 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4198311-4203310 Arabidopsis thaliana
AT1G12340 10.0kb upstream 10.0kb upstream 10915 true Chr1: 4187396-4198310 Arabidopsis thaliana
AT1G12340 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4187396-4197395 Arabidopsis thaliana
AT1G12340 10.0kb downstream 10.0kb downstream 10915 true Chr1: 4197396-4208310 Arabidopsis thaliana
AT1G12340 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4198311-4208310 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121658234 5273 Angiosperm View MSA
122328390 5261 Brassicaceae Singleton cluster - no MSA
123769746 5264 Brassicales-Malvales Singleton cluster - no MSA
124268298 5266 SBM Singleton cluster - no MSA
124255165 5268 Malvidae View MSA
124041586 5270 Rosid View MSA
123612347 5271 Pentapetalae View MSA
122646853 5272 Eudicot View MSA
120930231 5274 Embryophyte View MSA
123427918 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.252     Low  
cufflinks 0.264     Low  
cufflinks 0.326       High
cufflinks 0.246     Low  
cufflinks 0.219     Low Low
cufflinks 0.278     Low  

0 Strain