Gene : AT1G12390 A. thaliana TAIR10
Defline:  (1 of 4) PTHR12290:SF18 - PROTEIN CORNICHON HOMOLOG 3-RELATED Genomic Order:  1224
Name:  ? AT1G12390 Secondary Identifier:  ? PAC:19655659
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G12390 0.5kb upstream 0.5kb upstream 2175 true Chr1: 4219600-4221774 Arabidopsis thaliana
AT1G12390 0.5kb upstream 0.5kb upstream 500 false Chr1: 4219600-4220099 Arabidopsis thaliana
AT1G12390 0.5kb downstream 0.5kb downstream 2175 true Chr1: 4220100-4222274 Arabidopsis thaliana
AT1G12390 0.5kb downstream 0.5kb downstream 500 false Chr1: 4221775-4222274 Arabidopsis thaliana
AT1G12390 1.0kb upstream 1.0kb upstream 2675 true Chr1: 4219100-4221774 Arabidopsis thaliana
AT1G12390 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4219100-4220099 Arabidopsis thaliana
AT1G12390 1.0kb downstream 1.0kb downstream 2675 true Chr1: 4220100-4222774 Arabidopsis thaliana
AT1G12390 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4221775-4222774 Arabidopsis thaliana
AT1G12390 2.0kb upstream 2.0kb upstream 3675 true Chr1: 4218100-4221774 Arabidopsis thaliana
AT1G12390 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4218100-4220099 Arabidopsis thaliana
AT1G12390 2.0kb downstream 2.0kb downstream 3675 true Chr1: 4220100-4223774 Arabidopsis thaliana
AT1G12390 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4221775-4223774 Arabidopsis thaliana
AT1G12390 5.0kb upstream 5.0kb upstream 6675 true Chr1: 4215100-4221774 Arabidopsis thaliana
AT1G12390 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4215100-4220099 Arabidopsis thaliana
AT1G12390 5.0kb downstream 5.0kb downstream 6675 true Chr1: 4220100-4226774 Arabidopsis thaliana
AT1G12390 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4221775-4226774 Arabidopsis thaliana
AT1G12390 10.0kb upstream 10.0kb upstream 11675 true Chr1: 4210100-4221774 Arabidopsis thaliana
AT1G12390 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4210100-4220099 Arabidopsis thaliana
AT1G12390 10.0kb downstream 10.0kb downstream 11675 true Chr1: 4220100-4231774 Arabidopsis thaliana
AT1G12390 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4221775-4231774 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381235 5261 Brassicaceae View MSA
123835843 5264 Brassicales-Malvales View MSA
124341582 5266 SBM View MSA
124248925 5268 Malvidae View MSA
124061423 5270 Rosid View MSA
123752732 5271 Pentapetalae View MSA
122796851 5272 Eudicot View MSA
122045878 5273 Angiosperm View MSA
121348735 5274 Embryophyte View MSA
123427918 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.233        
cufflinks 16.332       High
cufflinks 8.061       Low
cufflinks 15.452        
cufflinks 8.907        
cufflinks 13.368        

0 Strain