Gene : SRS A. thaliana TAIR10
Primary Identifier:  ? AT1G11870 Defline:  (1 of 1) PTHR11778//PTHR11778:SF0 - SERYL-TRNA SYNTHETASE // SERINE--TRNA LIGASE, MITOCHONDRIAL
Genomic Order:  1166 Name:  ? AT1G11870
Secondary Identifier:  ? PAC:19650745
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G11870 0.5kb upstream 0.5kb upstream 3394 true Chr1: 4003346-4006739 Arabidopsis thaliana
AT1G11870 0.5kb upstream 0.5kb upstream 500 false Chr1: 4003346-4003845 Arabidopsis thaliana
AT1G11870 0.5kb downstream 0.5kb downstream 3394 true Chr1: 4003846-4007239 Arabidopsis thaliana
AT1G11870 0.5kb downstream 0.5kb downstream 500 false Chr1: 4006740-4007239 Arabidopsis thaliana
AT1G11870 1.0kb upstream 1.0kb upstream 3894 true Chr1: 4002846-4006739 Arabidopsis thaliana
AT1G11870 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4002846-4003845 Arabidopsis thaliana
AT1G11870 1.0kb downstream 1.0kb downstream 3894 true Chr1: 4003846-4007739 Arabidopsis thaliana
AT1G11870 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4006740-4007739 Arabidopsis thaliana
AT1G11870 2.0kb upstream 2.0kb upstream 4894 true Chr1: 4001846-4006739 Arabidopsis thaliana
AT1G11870 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4001846-4003845 Arabidopsis thaliana
AT1G11870 2.0kb downstream 2.0kb downstream 4894 true Chr1: 4003846-4008739 Arabidopsis thaliana
AT1G11870 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4006740-4008739 Arabidopsis thaliana
AT1G11870 5.0kb upstream 5.0kb upstream 7894 true Chr1: 3998846-4006739 Arabidopsis thaliana
AT1G11870 5.0kb upstream 5.0kb upstream 5000 false Chr1: 3998846-4003845 Arabidopsis thaliana
AT1G11870 5.0kb downstream 5.0kb downstream 7894 true Chr1: 4003846-4011739 Arabidopsis thaliana
AT1G11870 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4006740-4011739 Arabidopsis thaliana
AT1G11870 10.0kb upstream 10.0kb upstream 12894 true Chr1: 3993846-4006739 Arabidopsis thaliana
AT1G11870 10.0kb upstream 10.0kb upstream 10000 false Chr1: 3993846-4003845 Arabidopsis thaliana
AT1G11870 10.0kb downstream 10.0kb downstream 12894 true Chr1: 4003846-4016739 Arabidopsis thaliana
AT1G11870 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4006740-4016739 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379096 5261 Brassicaceae View MSA
123833233 5264 Brassicales-Malvales View MSA
124340826 5266 SBM View MSA
124238864 5268 Malvidae View MSA
124074907 5270 Rosid View MSA
123738384 5271 Pentapetalae View MSA
122793450 5272 Eudicot View MSA
122045874 5273 Angiosperm View MSA
121344249 5274 Embryophyte View MSA
123424928 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.813        
cufflinks 1.62        
cufflinks 4.241       High
cufflinks 1.718        
cufflinks 3.361        
cufflinks 1.522       Low

0 Strain