Gene : AT1G09620 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11946//PTHR11946:SF51 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES // LEUCINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  917
Name:  ? AT1G09620 Secondary Identifier:  ? PAC:19651946
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G09620 0.5kb upstream 0.5kb upstream 4422 true Chr1: 3112778-3117199 Arabidopsis thaliana
AT1G09620 0.5kb upstream 0.5kb upstream 500 false Chr1: 3116700-3117199 Arabidopsis thaliana
AT1G09620 0.5kb downstream 0.5kb downstream 4422 true Chr1: 3112278-3116699 Arabidopsis thaliana
AT1G09620 0.5kb downstream 0.5kb downstream 500 false Chr1: 3112278-3112777 Arabidopsis thaliana
AT1G09620 1.0kb upstream 1.0kb upstream 4922 true Chr1: 3112778-3117699 Arabidopsis thaliana
AT1G09620 1.0kb upstream 1.0kb upstream 1000 false Chr1: 3116700-3117699 Arabidopsis thaliana
AT1G09620 1.0kb downstream 1.0kb downstream 4922 true Chr1: 3111778-3116699 Arabidopsis thaliana
AT1G09620 1.0kb downstream 1.0kb downstream 1000 false Chr1: 3111778-3112777 Arabidopsis thaliana
AT1G09620 2.0kb upstream 2.0kb upstream 5922 true Chr1: 3112778-3118699 Arabidopsis thaliana
AT1G09620 2.0kb upstream 2.0kb upstream 2000 false Chr1: 3116700-3118699 Arabidopsis thaliana
AT1G09620 2.0kb downstream 2.0kb downstream 5922 true Chr1: 3110778-3116699 Arabidopsis thaliana
AT1G09620 2.0kb downstream 2.0kb downstream 2000 false Chr1: 3110778-3112777 Arabidopsis thaliana
AT1G09620 5.0kb upstream 5.0kb upstream 8922 true Chr1: 3112778-3121699 Arabidopsis thaliana
AT1G09620 5.0kb upstream 5.0kb upstream 5000 false Chr1: 3116700-3121699 Arabidopsis thaliana
AT1G09620 5.0kb downstream 5.0kb downstream 8922 true Chr1: 3107778-3116699 Arabidopsis thaliana
AT1G09620 5.0kb downstream 5.0kb downstream 5000 false Chr1: 3107778-3112777 Arabidopsis thaliana
AT1G09620 10.0kb upstream 10.0kb upstream 13922 true Chr1: 3112778-3126699 Arabidopsis thaliana
AT1G09620 10.0kb upstream 10.0kb upstream 10000 false Chr1: 3116700-3126699 Arabidopsis thaliana
AT1G09620 10.0kb downstream 10.0kb downstream 13922 true Chr1: 3102778-3116699 Arabidopsis thaliana
AT1G09620 10.0kb downstream 10.0kb downstream 10000 false Chr1: 3102778-3112777 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368592 5261 Brassicaceae View MSA
123840643 5264 Brassicales-Malvales View MSA
124345424 5266 SBM View MSA
124237184 5268 Malvidae View MSA
124066090 5270 Rosid View MSA
123749882 5271 Pentapetalae View MSA
122789988 5272 Eudicot View MSA
122047618 5273 Angiosperm View MSA
121344832 5274 Embryophyte View MSA
123424388 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.143     High  
cufflinks 41.158     High  
cufflinks 37.453     High  
cufflinks 45.26     High  
cufflinks 35.955     High Low
cufflinks 48.932     High High

0 Strain