Gene : AT1G09580 A. thaliana TAIR10
Defline:  (1 of 3) PTHR22811//PTHR22811:SF68 - TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  913
Name:  ? AT1G09580 Secondary Identifier:  ? PAC:19652131
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G09580 0.5kb upstream 0.5kb upstream 2203 true Chr1: 3104088-3106290 Arabidopsis thaliana
AT1G09580 0.5kb upstream 0.5kb upstream 500 false Chr1: 3104088-3104587 Arabidopsis thaliana
AT1G09580 0.5kb downstream 0.5kb downstream 2203 true Chr1: 3104588-3106790 Arabidopsis thaliana
AT1G09580 0.5kb downstream 0.5kb downstream 500 false Chr1: 3106291-3106790 Arabidopsis thaliana
AT1G09580 1.0kb upstream 1.0kb upstream 2703 true Chr1: 3103588-3106290 Arabidopsis thaliana
AT1G09580 1.0kb upstream 1.0kb upstream 1000 false Chr1: 3103588-3104587 Arabidopsis thaliana
AT1G09580 1.0kb downstream 1.0kb downstream 2703 true Chr1: 3104588-3107290 Arabidopsis thaliana
AT1G09580 1.0kb downstream 1.0kb downstream 1000 false Chr1: 3106291-3107290 Arabidopsis thaliana
AT1G09580 2.0kb upstream 2.0kb upstream 3703 true Chr1: 3102588-3106290 Arabidopsis thaliana
AT1G09580 2.0kb upstream 2.0kb upstream 2000 false Chr1: 3102588-3104587 Arabidopsis thaliana
AT1G09580 2.0kb downstream 2.0kb downstream 3703 true Chr1: 3104588-3108290 Arabidopsis thaliana
AT1G09580 2.0kb downstream 2.0kb downstream 2000 false Chr1: 3106291-3108290 Arabidopsis thaliana
AT1G09580 5.0kb upstream 5.0kb upstream 6703 true Chr1: 3099588-3106290 Arabidopsis thaliana
AT1G09580 5.0kb upstream 5.0kb upstream 5000 false Chr1: 3099588-3104587 Arabidopsis thaliana
AT1G09580 5.0kb downstream 5.0kb downstream 6703 true Chr1: 3104588-3111290 Arabidopsis thaliana
AT1G09580 5.0kb downstream 5.0kb downstream 5000 false Chr1: 3106291-3111290 Arabidopsis thaliana
AT1G09580 10.0kb upstream 10.0kb upstream 11703 true Chr1: 3094588-3106290 Arabidopsis thaliana
AT1G09580 10.0kb upstream 10.0kb upstream 10000 false Chr1: 3094588-3104587 Arabidopsis thaliana
AT1G09580 10.0kb downstream 10.0kb downstream 11703 true Chr1: 3104588-3116290 Arabidopsis thaliana
AT1G09580 10.0kb downstream 10.0kb downstream 10000 false Chr1: 3106291-3116290 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369573 5261 Brassicaceae View MSA
123829866 5264 Brassicales-Malvales View MSA
124349960 5266 SBM View MSA
124245233 5268 Malvidae View MSA
124065325 5270 Rosid View MSA
123743210 5271 Pentapetalae View MSA
122786619 5272 Eudicot View MSA
122045643 5273 Angiosperm View MSA
121349336 5274 Embryophyte View MSA
123428181 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.403       Low
cufflinks 5.425        
cufflinks 3.935        
cufflinks 6.994       High
cufflinks 3.642        
cufflinks 7.425       High

0 Strain