Gene : BIP3 A. thaliana TAIR10
Primary Identifier:  ? AT1G09080 Defline:  (1 of 1) PTHR19375:SF215 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37B-RELATED
Genomic Order:  857 Name:  ? AT1G09080
Secondary Identifier:  ? PAC:19654674
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G09080 0.5kb upstream 0.5kb upstream 3125 true Chr1: 2929217-2932341 Arabidopsis thaliana
AT1G09080 0.5kb upstream 0.5kb upstream 500 false Chr1: 2931842-2932341 Arabidopsis thaliana
AT1G09080 0.5kb downstream 0.5kb downstream 3125 true Chr1: 2928717-2931841 Arabidopsis thaliana
AT1G09080 0.5kb downstream 0.5kb downstream 500 false Chr1: 2928717-2929216 Arabidopsis thaliana
AT1G09080 1.0kb upstream 1.0kb upstream 3625 true Chr1: 2929217-2932841 Arabidopsis thaliana
AT1G09080 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2931842-2932841 Arabidopsis thaliana
AT1G09080 1.0kb downstream 1.0kb downstream 3625 true Chr1: 2928217-2931841 Arabidopsis thaliana
AT1G09080 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2928217-2929216 Arabidopsis thaliana
AT1G09080 2.0kb upstream 2.0kb upstream 4625 true Chr1: 2929217-2933841 Arabidopsis thaliana
AT1G09080 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2931842-2933841 Arabidopsis thaliana
AT1G09080 2.0kb downstream 2.0kb downstream 4625 true Chr1: 2927217-2931841 Arabidopsis thaliana
AT1G09080 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2927217-2929216 Arabidopsis thaliana
AT1G09080 5.0kb upstream 5.0kb upstream 7625 true Chr1: 2929217-2936841 Arabidopsis thaliana
AT1G09080 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2931842-2936841 Arabidopsis thaliana
AT1G09080 5.0kb downstream 5.0kb downstream 7625 true Chr1: 2924217-2931841 Arabidopsis thaliana
AT1G09080 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2924217-2929216 Arabidopsis thaliana
AT1G09080 10.0kb upstream 10.0kb upstream 12625 true Chr1: 2929217-2941841 Arabidopsis thaliana
AT1G09080 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2931842-2941841 Arabidopsis thaliana
AT1G09080 10.0kb downstream 10.0kb downstream 12625 true Chr1: 2919217-2931841 Arabidopsis thaliana
AT1G09080 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2919217-2929216 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378579 5261 Brassicaceae View MSA
123838029 5264 Brassicales-Malvales View MSA
124347689 5266 SBM View MSA
124245601 5268 Malvidae View MSA
124071160 5270 Rosid View MSA
123753199 5271 Pentapetalae View MSA
122797693 5272 Eudicot View MSA
122051630 5273 Angiosperm View MSA
121350405 5274 Embryophyte View MSA
123428541 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.797       High
cufflinks 0.098     Low  
cufflinks 0.933        
cufflinks 0.146     Low  
cufflinks 4.358        
cufflinks 0.171     Low  

0 Strain