Gene : AT1G09190 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  869
Name:  ? AT1G09190 Secondary Identifier:  ? PAC:19649637
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G09190 0.5kb upstream 0.5kb upstream 2099 true Chr1: 2966120-2968218 Arabidopsis thaliana
AT1G09190 0.5kb upstream 0.5kb upstream 500 false Chr1: 2967719-2968218 Arabidopsis thaliana
AT1G09190 0.5kb downstream 0.5kb downstream 2099 true Chr1: 2965620-2967718 Arabidopsis thaliana
AT1G09190 0.5kb downstream 0.5kb downstream 500 false Chr1: 2965620-2966119 Arabidopsis thaliana
AT1G09190 1.0kb upstream 1.0kb upstream 2599 true Chr1: 2966120-2968718 Arabidopsis thaliana
AT1G09190 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2967719-2968718 Arabidopsis thaliana
AT1G09190 1.0kb downstream 1.0kb downstream 2599 true Chr1: 2965120-2967718 Arabidopsis thaliana
AT1G09190 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2965120-2966119 Arabidopsis thaliana
AT1G09190 2.0kb upstream 2.0kb upstream 3599 true Chr1: 2966120-2969718 Arabidopsis thaliana
AT1G09190 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2967719-2969718 Arabidopsis thaliana
AT1G09190 2.0kb downstream 2.0kb downstream 3599 true Chr1: 2964120-2967718 Arabidopsis thaliana
AT1G09190 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2964120-2966119 Arabidopsis thaliana
AT1G09190 5.0kb upstream 5.0kb upstream 6599 true Chr1: 2966120-2972718 Arabidopsis thaliana
AT1G09190 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2967719-2972718 Arabidopsis thaliana
AT1G09190 5.0kb downstream 5.0kb downstream 6599 true Chr1: 2961120-2967718 Arabidopsis thaliana
AT1G09190 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2961120-2966119 Arabidopsis thaliana
AT1G09190 10.0kb upstream 10.0kb upstream 11599 true Chr1: 2966120-2977718 Arabidopsis thaliana
AT1G09190 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2967719-2977718 Arabidopsis thaliana
AT1G09190 10.0kb downstream 10.0kb downstream 11599 true Chr1: 2956120-2967718 Arabidopsis thaliana
AT1G09190 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2956120-2966119 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374792 5261 Brassicaceae View MSA
123829185 5264 Brassicales-Malvales View MSA
124339338 5266 SBM View MSA
124243300 5268 Malvidae View MSA
124072342 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.446        
cufflinks 2.138        
cufflinks 1.372        
cufflinks 2.032        
cufflinks 0.911       Low
cufflinks 2.179        

0 Strain