Gene : AT1G08800 A. thaliana TAIR10
Defline:  (1 of 16) PF04576 - Zein-binding (Zein-binding) Genomic Order:  829
Name:  ? AT1G08800 Secondary Identifier:  ? PAC:19655887
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G08800 0.5kb upstream 0.5kb upstream 5448 true Chr1: 2813061-2818508 Arabidopsis thaliana
AT1G08800 0.5kb upstream 0.5kb upstream 500 false Chr1: 2818009-2818508 Arabidopsis thaliana
AT1G08800 0.5kb downstream 0.5kb downstream 5448 true Chr1: 2812561-2818008 Arabidopsis thaliana
AT1G08800 0.5kb downstream 0.5kb downstream 500 false Chr1: 2812561-2813060 Arabidopsis thaliana
AT1G08800 1.0kb upstream 1.0kb upstream 5948 true Chr1: 2813061-2819008 Arabidopsis thaliana
AT1G08800 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2818009-2819008 Arabidopsis thaliana
AT1G08800 1.0kb downstream 1.0kb downstream 5948 true Chr1: 2812061-2818008 Arabidopsis thaliana
AT1G08800 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2812061-2813060 Arabidopsis thaliana
AT1G08800 2.0kb upstream 2.0kb upstream 6948 true Chr1: 2813061-2820008 Arabidopsis thaliana
AT1G08800 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2818009-2820008 Arabidopsis thaliana
AT1G08800 2.0kb downstream 2.0kb downstream 6948 true Chr1: 2811061-2818008 Arabidopsis thaliana
AT1G08800 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2811061-2813060 Arabidopsis thaliana
AT1G08800 5.0kb upstream 5.0kb upstream 9948 true Chr1: 2813061-2823008 Arabidopsis thaliana
AT1G08800 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2818009-2823008 Arabidopsis thaliana
AT1G08800 5.0kb downstream 5.0kb downstream 9948 true Chr1: 2808061-2818008 Arabidopsis thaliana
AT1G08800 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2808061-2813060 Arabidopsis thaliana
AT1G08800 10.0kb upstream 10.0kb upstream 14948 true Chr1: 2813061-2828008 Arabidopsis thaliana
AT1G08800 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2818009-2828008 Arabidopsis thaliana
AT1G08800 10.0kb downstream 10.0kb downstream 14948 true Chr1: 2803061-2818008 Arabidopsis thaliana
AT1G08800 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2803061-2813060 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362027 5261 Brassicaceae View MSA
123838989 5264 Brassicales-Malvales View MSA
124350144 5266 SBM View MSA
124251951 5268 Malvidae View MSA
124071861 5270 Rosid View MSA
123744785 5271 Pentapetalae View MSA
122794145 5272 Eudicot View MSA
122050916 5273 Angiosperm View MSA
121351297 5274 Embryophyte View MSA
123382108 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.483        
cufflinks 4.155        
cufflinks 2.018       Low
cufflinks 5.665       High
cufflinks 2.186        
cufflinks 4.418        

0 Strain