Gene : PS1 A. thaliana TAIR10
Primary Identifier:  ? AT1G08700 Defline:  (1 of 1) PTHR10202 - PRESENILIN
Genomic Order:  820 Name:  ? AT1G08700
Secondary Identifier:  ? PAC:19651106
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G08700 0.5kb upstream 0.5kb upstream 2163 true Chr1: 2769815-2771977 Arabidopsis thaliana
AT1G08700 0.5kb upstream 0.5kb upstream 500 false Chr1: 2771478-2771977 Arabidopsis thaliana
AT1G08700 0.5kb downstream 0.5kb downstream 2163 true Chr1: 2769315-2771477 Arabidopsis thaliana
AT1G08700 0.5kb downstream 0.5kb downstream 500 false Chr1: 2769315-2769814 Arabidopsis thaliana
AT1G08700 1.0kb upstream 1.0kb upstream 2663 true Chr1: 2769815-2772477 Arabidopsis thaliana
AT1G08700 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2771478-2772477 Arabidopsis thaliana
AT1G08700 1.0kb downstream 1.0kb downstream 2663 true Chr1: 2768815-2771477 Arabidopsis thaliana
AT1G08700 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2768815-2769814 Arabidopsis thaliana
AT1G08700 2.0kb upstream 2.0kb upstream 3663 true Chr1: 2769815-2773477 Arabidopsis thaliana
AT1G08700 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2771478-2773477 Arabidopsis thaliana
AT1G08700 2.0kb downstream 2.0kb downstream 3663 true Chr1: 2767815-2771477 Arabidopsis thaliana
AT1G08700 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2767815-2769814 Arabidopsis thaliana
AT1G08700 5.0kb upstream 5.0kb upstream 6663 true Chr1: 2769815-2776477 Arabidopsis thaliana
AT1G08700 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2771478-2776477 Arabidopsis thaliana
AT1G08700 5.0kb downstream 5.0kb downstream 6663 true Chr1: 2764815-2771477 Arabidopsis thaliana
AT1G08700 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2764815-2769814 Arabidopsis thaliana
AT1G08700 10.0kb upstream 10.0kb upstream 11663 true Chr1: 2769815-2781477 Arabidopsis thaliana
AT1G08700 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2771478-2781477 Arabidopsis thaliana
AT1G08700 10.0kb downstream 10.0kb downstream 11663 true Chr1: 2759815-2771477 Arabidopsis thaliana
AT1G08700 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2759815-2769814 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374456 5261 Brassicaceae View MSA
123832334 5264 Brassicales-Malvales View MSA
124339048 5266 SBM View MSA
124242625 5268 Malvidae View MSA
124063592 5270 Rosid View MSA
123748546 5271 Pentapetalae View MSA
122790840 5272 Eudicot View MSA
122049657 5273 Angiosperm View MSA
121347498 5274 Embryophyte View MSA
123424512 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.975        
cufflinks 16.883        
cufflinks 12.108       Low
cufflinks 18.373       High
cufflinks 15.026        
cufflinks 17.292        

0 Strain